Literature DB >> 9380704

Intron "sliding" and the diversity of intron positions.

A Stoltzfus1, J M Logsdon, J D Palmer, W F Doolittle.   

Abstract

Alignments of homologous genes typically reveal a great diversity of intron locations, far more than could fit comfortably in a single gene. Thus, a minority of these intron positions could be inherited from a single ancestral gene, but the larger share must be attributed to subsequent events of intron gain or intron "sliding" (movement from one position to another within a gene). Intron sliding has been argued from cases of discordant introns and from putative spatial clustering of intron positions. A list of 32 cases of discordant introns is presented here. Most of these cases are found to be artefactual. The spatial and phylogenetic distributions of intron positions from five published compilations of gene data, comprising 205 intron positions, have been examined systematically for evidence of intron sliding. The results suggest that sliding, if it occurs at all, has contributed little to the diversity of intron positions.

Mesh:

Year:  1997        PMID: 9380704      PMCID: PMC23469          DOI: 10.1073/pnas.94.20.10739

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  31 in total

1.  Structure, evolution and anaerobic regulation of a nuclear gene encoding cytosolic glyceraldehyde-3-phosphate dehydrogenase from maize.

Authors:  P Martinez; W Martin; R Cerff
Journal:  J Mol Biol       Date:  1989-08-20       Impact factor: 5.469

Review 2.  The recent origins of introns.

Authors:  J D Palmer; J M Logsdon
Journal:  Curr Opin Genet Dev       Date:  1991-12       Impact factor: 5.578

3.  Proteins, exons and molecular evolution.

Authors:  S K Holland; C C Blake
Journal:  Biosystems       Date:  1987       Impact factor: 1.973

4.  Animals and fungi are each other's closest relatives: congruent evidence from multiple proteins.

Authors:  S L Baldauf; J D Palmer
Journal:  Proc Natl Acad Sci U S A       Date:  1993-12-15       Impact factor: 11.205

5.  Methods for evaluating exon-protein correspondences.

Authors:  A Stoltzfus; D F Spencer; W F Doolittle
Journal:  Comput Appl Biosci       Date:  1995-10

6.  Analysis of the introns in genes encoding small G proteins.

Authors:  W Dietmaier; S Fabry
Journal:  Curr Genet       Date:  1994 Nov-Dec       Impact factor: 3.886

7.  The chicken carbonic anhydrase II gene: evidence for a recent shift in intron position.

Authors:  C M Yoshihara; J D Lee; J B Dodgson
Journal:  Nucleic Acids Res       Date:  1987-01-26       Impact factor: 16.971

8.  Structure determination and evolution of the chicken cDNA and gene encoding prepropancreatic polypeptide.

Authors:  K Nata; T Sugimoto; K Kohri; H Hidaka; E Hattori; H Yamamoto; H Yonekura; H Okamoto
Journal:  Gene       Date:  1993-08-25       Impact factor: 3.688

9.  Evidence that introns arose at proto-splice sites.

Authors:  N J Dibb; A J Newman
Journal:  EMBO J       Date:  1989-07       Impact factor: 11.598

10.  Intron positions in actin genes seem unrelated to the secondary structure of the protein.

Authors:  K Weber; W Kabsch
Journal:  EMBO J       Date:  1994-03-15       Impact factor: 11.598

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  58 in total

1.  EID: the Exon-Intron Database-an exhaustive database of protein-coding intron-containing genes.

Authors:  S Saxonov; I Daizadeh; A Fedorov; W Gilbert
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Mariner-like transposases are widespread and diverse in flowering plants.

Authors:  Cédric Feschotte; Susan R Wessler
Journal:  Proc Natl Acad Sci U S A       Date:  2001-12-26       Impact factor: 11.205

3.  Intron evolution as a population-genetic process.

Authors:  Michael Lynch
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-30       Impact factor: 11.205

4.  Genomic characterization of human DSPG3.

Authors:  M Deere; J L Dieguez; S J Yoon; D Hewett-Emmett; A de la Chapelle; J T Hecht
Journal:  Genome Res       Date:  1999-05       Impact factor: 9.043

5.  Intron gain and loss in the evolution of the conserved eukaryotic recombination machinery.

Authors:  Frank Hartung; Frank R Blattner; Holger Puchta
Journal:  Nucleic Acids Res       Date:  2002-12-01       Impact factor: 16.971

6.  A new Drosophila spliceosomal intron position is common in plants.

Authors:  Rosa Tarrio; Francisco Rodríguez-Trelles; Francisco J Ayala
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-15       Impact factor: 11.205

7.  Large-scale comparison of intron positions among animal, plant, and fungal genes.

Authors:  Alexei Fedorov; Amir Feisal Merican; Walter Gilbert
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-20       Impact factor: 11.205

8.  Evolution of the AMP-forming acetyl-CoA synthetase gene in the Drosophilidae family.

Authors:  Dev Karan; Maïalène Lesbats; Jean R David; Pierre Capy
Journal:  J Mol Evol       Date:  2003       Impact factor: 2.395

9.  Cytochromes p450.

Authors:  Søren Bak; Fred Beisson; Gerard Bishop; Björn Hamberger; René Höfer; Suzanne Paquette; Danièle Werck-Reichhart
Journal:  Arabidopsis Book       Date:  2011-10-06

10.  Cytochromes p450.

Authors:  Danièle Werck-Reichhart; Søren Bak; Suzanne Paquette
Journal:  Arabidopsis Book       Date:  2002-04-04
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