Literature DB >> 1989688

Analysis of phi and chi 1 torsion angles for hen lysozyme in solution from 1H NMR spin-spin coupling constants.

L J Smith1, M J Sutcliffe, C Redfield, C M Dobson.   

Abstract

Three-bond 3JHN alpha coupling constants have been determined for 106 residues and 3J alpha beta coupling constants have been measured for 57 residues of the 129-residue protein hen egg white lysozyme. These NMR data have been compared with torsion angles defined in the tetragonal and the triclinic crystal forms of the protein. For most residues the measured 3JHN alpha values were consistent with the phi torsion angles found in both crystal forms; the RMS difference between the coupling constants calculated by using the tetragonal crystal structure phi angles and the experimental 3JHN alpha values is 0.88 Hz. Thus there appears to be no significant averaging of the phi torsion angle either in the interior or at the surface of the protein. For 41 of the residues where 3J alpha beta coupling constants have been determined, the values are consistent with a single staggered conformation about the chi 1 torsion angle and there is complete agreement between the NMR data in solution and the torsion angles defined in the crystalline state. In contrast, for the other 16 residues where 3J alpha beta coupling constant values have been measured, the data indicate extensive motional averaging about the chi 1 torsion angle. These residues occur largely on the surface of the protein and examination of the crystal structures shows that many of these residues adopt a different conformation in the triclinic and tetragonal crystal forms and have high crystallographic temperature factors. It appears, however, that in solution conformational flexibility of the side chains of surface residues is significantly more pronounced than in individual crystal structures.

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Year:  1991        PMID: 1989688     DOI: 10.1021/bi00218a015

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  33 in total

1.  Intensity modulated HSQC and HMQC: two simple methods to measure 3J(HNH)alpha in proteins.

Authors:  P Permi; I Kilpeläinen; A Annila; S Heikkinen
Journal:  J Biomol NMR       Date:  2000-01       Impact factor: 2.835

2.  A refined solution structure of hen lysozyme determined using residual dipolar coupling data.

Authors:  H Schwalbe; S B Grimshaw; A Spencer; M Buck; J Boyd; C M Dobson; C Redfield; L J Smith
Journal:  Protein Sci       Date:  2001-04       Impact factor: 6.725

3.  Positive theta-angles in proteins by nuclear magnetic resonance spectroscopy.

Authors:  S Ludvigsen; F M Poulsen
Journal:  J Biomol NMR       Date:  1992-05       Impact factor: 2.835

4.  Molecular dynamics simulation of thionated hen egg white lysozyme.

Authors:  Wei Huang; Andreas P Eichenberger; Wilfred F van Gunsteren
Journal:  Protein Sci       Date:  2012-06-25       Impact factor: 6.725

5.  On the calculation of ³Jαβ-coupling constants for side chains in proteins.

Authors:  Denise Steiner; Jane R Allison; Andreas P Eichenberger; Wilfred F van Gunsteren
Journal:  J Biomol NMR       Date:  2012-06-20       Impact factor: 2.835

6.  Validation of the GROMOS force-field parameter set 45Alpha3 against nuclear magnetic resonance data of hen egg lysozyme.

Authors:  T A Soares; X Daura; C Oostenbrink; L J Smith; W F van Gunsteren
Journal:  J Biomol NMR       Date:  2004-12       Impact factor: 2.835

7.  Asparagine and glutamine side-chain conformation in solution and crystal: a comparison for hen egg-white lysozyme using residual dipolar couplings.

Authors:  Victoria A Higman; Jonathan Boyd; Lorna J Smith; Christina Redfield
Journal:  J Biomol NMR       Date:  2004-11       Impact factor: 2.835

8.  Heterologous expression of hen egg white lysozyme and resonance assignment of tryptophan side chains in its non-native states.

Authors:  Christian Schlörb; Katrin Ackermann; Christian Richter; Julia Wirmer; Harald Schwalbe
Journal:  J Biomol NMR       Date:  2005-10       Impact factor: 2.835

9.  Validation of the 53A6 GROMOS force field.

Authors:  Chris Oostenbrink; Thereza A Soares; Nico F A van der Vegt; Wilfred F van Gunsteren
Journal:  Eur Biophys J       Date:  2005-04-01       Impact factor: 1.733

10.  The value of chemical shift parameters in the description of protein solution structures.

Authors:  Y Gao; N C Veitch; R J Williams
Journal:  J Biomol NMR       Date:  1991-11       Impact factor: 2.835

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