Literature DB >> 19894084

Carboxylation reaction catalyzed by 2-oxoglutarate:ferredoxin oxidoreductases from Hydrogenobacter thermophilus.

Masahiro Yamamoto1, Takeshi Ikeda, Hiroyuki Arai, Masaharu Ishii, Yasuo Igarashi.   

Abstract

Hydrogenobacter thermophilus TK-6 is a thermophilic, chemolithoautotrophic, hydrogen-oxidizing bacterium that fixes carbon dioxide via the reductive tricarboxylic acid (rTCA) cycle. 2-Oxoglutarate:ferredoxin oxidoreductase (OGOR) is the key enzyme in this cycle that fixes carbon dioxide. The genome of strain TK-6 encodes at least two distinct OGOR enzymes, termed For and Kor. We report here a method for measuring the carboxylation of succinyl-CoA catalyzed by OGORs. The method involves the in vitro coupling of OGOR with ferredoxin and pyruvate:ferredoxin oxidoreductase from strain TK-6, and glutamate dehydrogenase from Sulfolobus tokodaii. Using this method, we determined both the apparent maximum velocities and the K (m) values of For and Kor for the carboxylation of succinyl-CoA. This is the first reported kinetic analysis of carbon fixation catalyzed by OGOR enzymes from the rTCA cycle.

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Year:  2009        PMID: 19894084     DOI: 10.1007/s00792-009-0289-4

Source DB:  PubMed          Journal:  Extremophiles        ISSN: 1431-0651            Impact factor:   2.395


  29 in total

1.  A novel five-subunit-type 2-oxoglutalate:ferredoxin oxidoreductases from Hydrogenobacter thermophilus TK-6.

Authors:  Na-Rae Yun; Masahiro Yamamoto; Hiroyuki Arai; Masaharu Ishii; Yasuo Igarashi
Journal:  Biochem Biophys Res Commun       Date:  2002-03-22       Impact factor: 3.575

2.  Enzymatic and genetic characterization of carbon and energy metabolisms by deep-sea hydrothermal chemolithoautotrophic isolates of Epsilonproteobacteria.

Authors:  Ken Takai; Barbara J Campbell; S Craig Cary; Masae Suzuki; Hanako Oida; Takuro Nunoura; Hisako Hirayama; Satoshi Nakagawa; Yohey Suzuki; Fumio Inagaki; Koki Horikoshi
Journal:  Appl Environ Microbiol       Date:  2005-11       Impact factor: 4.792

3.  Autotrophic CO2 fixation via the reductive tricarboxylic acid cycle in different lineages within the phylum Aquificae: evidence for two ways of citrate cleavage.

Authors:  Michael Hügler; Harald Huber; Stephen J Molyneaux; Costantino Vetriani; Stefan M Sievert
Journal:  Environ Microbiol       Date:  2007-01       Impact factor: 5.491

4.  Purification and characterization of membrane-bound hydrogenase from Hydrogenobacter thermophilus strain TK-6, an obligately autotrophic, thermophilic, hydrogen-oxidizing bacterium.

Authors:  M Ishii; S Takishita; T Iwasaki; Y Peerapornpisal; J Yoshino; T Kodama; Y Igarashi
Journal:  Biosci Biotechnol Biochem       Date:  2000-03       Impact factor: 2.043

5.  A new ferredoxin-dependent carbon reduction cycle in a photosynthetic bacterium.

Authors:  M C Evans; B B Buchanan; D I Arnon
Journal:  Proc Natl Acad Sci U S A       Date:  1966-04       Impact factor: 11.205

6.  Evidence for autotrophic CO2 fixation via the reductive tricarboxylic acid cycle by members of the epsilon subdivision of proteobacteria.

Authors:  Michael Hügler; Carl O Wirsen; Georg Fuchs; Craig D Taylor; Stefan M Sievert
Journal:  J Bacteriol       Date:  2005-05       Impact factor: 3.490

7.  A novel ferredoxin-dependent glutamate synthase from the hydrogen-oxidizing chemoautotrophic bacterium Hydrogenobacter thermophilus TK-6.

Authors:  Masafumi Kameya; Takeshi Ikeda; Miyuki Nakamura; Hiroyuki Arai; Masaharu Ishii; Yasuo Igarashi
Journal:  J Bacteriol       Date:  2007-01-19       Impact factor: 3.490

8.  A novel enzyme, citryl-CoA synthetase, catalysing the first step of the citrate cleavage reaction in Hydrogenobacter thermophilus TK-6.

Authors:  Miho Aoshima; Masaharu Ishii; Yasuo Igarashi
Journal:  Mol Microbiol       Date:  2004-05       Impact factor: 3.501

9.  Properties of 2-oxoglutarate:ferredoxin oxidoreductase from Thauera aromatica and its role in enzymatic reduction of the aromatic ring.

Authors:  Edith Dörner; Matthias Boll
Journal:  J Bacteriol       Date:  2002-07       Impact factor: 3.490

10.  Phylogenetic position of the genus Hydrogenobacter.

Authors:  C Pitulle; Y Yang; M Marchiani; E R Moore; J L Siefert; M Aragno; P Jurtshuk; G E Fox
Journal:  Int J Syst Bacteriol       Date:  1994-10
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  8 in total

Review 1.  Carboxylases in natural and synthetic microbial pathways.

Authors:  Tobias J Erb
Journal:  Appl Environ Microbiol       Date:  2011-10-14       Impact factor: 4.792

2.  The divergence and natural selection of autocatalytic primordial metabolic systems.

Authors:  Sergey A Marakushev; Ol'ga V Belonogova
Journal:  Orig Life Evol Biosph       Date:  2013-07-17       Impact factor: 1.950

3.  Light-driven carbon-carbon bond formation via CO2 reduction catalyzed by complexes of CdS nanorods and a 2-oxoacid oxidoreductase.

Authors:  Hayden Hamby; Bin Li; Katherine E Shinopoulos; Helena R Keller; Sean J Elliott; Gordana Dukovic
Journal:  Proc Natl Acad Sci U S A       Date:  2019-12-18       Impact factor: 11.205

Review 4.  Ecological aspects of the distribution of different autotrophic CO2 fixation pathways.

Authors:  Ivan A Berg
Journal:  Appl Environ Microbiol       Date:  2011-01-07       Impact factor: 4.792

5.  The Arnon-Buchanan cycle: a retrospective, 1966-2016.

Authors:  Bob B Buchanan; Reidun Sirevåg; Georg Fuchs; Ruslan N Ivanovsky; Yasuo Igarashi; Masaharu Ishii; F Robert Tabita; Ivan A Berg
Journal:  Photosynth Res       Date:  2017-10-10       Impact factor: 3.573

6.  Metabolic and evolutionary patterns in the extremely acidophilic archaeon Ferroplasma acidiphilum YT.

Authors:  Olga V Golyshina; Hai Tran; Oleg N Reva; Sofia Lemak; Alexander F Yakunin; Alexander Goesmann; Taras Y Nechitaylo; Violetta LaCono; Francesco Smedile; Alexei Slesarev; David Rojo; Coral Barbas; Manuel Ferrer; Michail M Yakimov; Peter N Golyshin
Journal:  Sci Rep       Date:  2017-06-16       Impact factor: 4.379

Review 7.  A structural phylogeny for understanding 2-oxoacid oxidoreductase function.

Authors:  Marcus I Gibson; Percival Yang-Ting Chen; Catherine L Drennan
Journal:  Curr Opin Struct Biol       Date:  2016-06-14       Impact factor: 6.809

8.  Decarboxylation of pyruvate to acetaldehyde for ethanol production by hyperthermophiles.

Authors:  Mohammad S Eram; Kesen Ma
Journal:  Biomolecules       Date:  2013-08-21
  8 in total

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