Literature DB >> 27315560

A structural phylogeny for understanding 2-oxoacid oxidoreductase function.

Marcus I Gibson1, Percival Yang-Ting Chen1, Catherine L Drennan2.   

Abstract

2-Oxoacid:ferredoxin oxidoreductases (OFORs) are essential enzymes in microbial one-carbon metabolism. They use thiamine pyrophosphate to reversibly cleave carbon-carbon bonds, generating low potential (∼-500mV) electrons. Crystallographic analysis of a recently discovered OFOR, an oxalate oxidoreductase (OOR), has provided a second view of OFOR architecture and active site composition. Using these recent structural data along with the previously determined structures of pyruvate:ferredoxin oxidoreductase, structure-function relationships in this superfamily have been expanded and re-evaluated. Additionally, structural motifs have been defined that better serve to distinguish one OFOR subfamily from another and potentially uncover novel OFORs.
Copyright © 2016 Elsevier Ltd. All rights reserved.

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Year:  2016        PMID: 27315560      PMCID: PMC5381805          DOI: 10.1016/j.sbi.2016.05.011

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  30 in total

1.  A novel five-subunit-type 2-oxoglutalate:ferredoxin oxidoreductases from Hydrogenobacter thermophilus TK-6.

Authors:  Na-Rae Yun; Masahiro Yamamoto; Hiroyuki Arai; Masaharu Ishii; Yasuo Igarashi
Journal:  Biochem Biophys Res Commun       Date:  2002-03-22       Impact factor: 3.575

2.  Bacillus subtilis YvrK is an acid-induced oxalate decarboxylase.

Authors:  A Tanner; S Bornemann
Journal:  J Bacteriol       Date:  2000-09       Impact factor: 3.490

3.  EPR spectroscopic and computational characterization of the hydroxyethylidene-thiamine pyrophosphate radical intermediate of pyruvate:ferredoxin oxidoreductase.

Authors:  Steven O Mansoorabadi; Javier Seravalli; Cristina Furdui; Vladimir Krymov; Gary J Gerfen; Tadhg P Begley; Jonathan Melnick; Stephen W Ragsdale; George H Reed
Journal:  Biochemistry       Date:  2006-06-13       Impact factor: 3.162

4.  Structures and functions of four anabolic 2-oxoacid oxidoreductases in Methanobacterium thermoautotrophicum.

Authors:  A Tersteegen; D Linder; R K Thauer; R Hedderich
Journal:  Eur J Biochem       Date:  1997-03-15

5.  Oxalate oxidase from barley roots: purification to homogeneity and study of some molecular, catalytic, and binding properties.

Authors:  V P Kotsira; Y D Clonis
Journal:  Arch Biochem Biophys       Date:  1997-04-15       Impact factor: 4.013

6.  Identification and characterization of oxalate oxidoreductase, a novel thiamine pyrophosphate-dependent 2-oxoacid oxidoreductase that enables anaerobic growth on oxalate.

Authors:  Elizabeth Pierce; Donald F Becker; Stephen W Ragsdale
Journal:  J Biol Chem       Date:  2010-10-18       Impact factor: 5.157

7.  The roles of coenzyme A in the pyruvate:ferredoxin oxidoreductase reaction mechanism: rate enhancement of electron transfer from a radical intermediate to an iron-sulfur cluster.

Authors:  Cristina Furdui; Stephen W Ragsdale
Journal:  Biochemistry       Date:  2002-08-06       Impact factor: 3.162

8.  Characterization of a fourth type of 2-keto acid-oxidizing enzyme from a hyperthermophilic archaeon: 2-ketoglutarate ferredoxin oxidoreductase from Thermococcus litoralis.

Authors:  X Mai; M W Adams
Journal:  J Bacteriol       Date:  1996-10       Impact factor: 3.490

9.  Molecular and phylogenetic characterization of pyruvate and 2-ketoisovalerate ferredoxin oxidoreductases from Pyrococcus furiosus and pyruvate ferredoxin oxidoreductase from Thermotoga maritima.

Authors:  A Kletzin; M W Adams
Journal:  J Bacteriol       Date:  1996-01       Impact factor: 3.490

10.  Properties of 2-oxoglutarate:ferredoxin oxidoreductase from Thauera aromatica and its role in enzymatic reduction of the aromatic ring.

Authors:  Edith Dörner; Matthias Boll
Journal:  J Bacteriol       Date:  2002-07       Impact factor: 3.490

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1.  X-ray crystallography-based structural elucidation of enzyme-bound intermediates along the 1-deoxy-d-xylulose 5-phosphate synthase reaction coordinate.

Authors:  Percival Yang-Ting Chen; Alicia A DeColli; Caren L Freel Meyers; Catherine L Drennan
Journal:  J Biol Chem       Date:  2019-06-25       Impact factor: 5.157

2.  Binding site for coenzyme A revealed in the structure of pyruvate:ferredoxin oxidoreductase from Moorella thermoacetica.

Authors:  Percival Yang-Ting Chen; Heather Aman; Mehmet Can; Stephen W Ragsdale; Catherine L Drennan
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3.  Crosstalk between the tricarboxylic acid cycle and peptidoglycan synthesis in Caulobacter crescentus through the homeostatic control of α-ketoglutarate.

Authors:  Irnov Irnov; Zhe Wang; Nicholas D Jannetty; Julian A Bustamante; Kyu Y Rhee; Christine Jacobs-Wagner
Journal:  PLoS Genet       Date:  2017-08-21       Impact factor: 5.917

4.  Cultivation and Genomic Analysis of "Candidatus Nitrosocaldus islandicus," an Obligately Thermophilic, Ammonia-Oxidizing Thaumarchaeon from a Hot Spring Biofilm in Graendalur Valley, Iceland.

Authors:  Anne Daebeler; Craig W Herbold; Julia Vierheilig; Christopher J Sedlacek; Petra Pjevac; Mads Albertsen; Rasmus H Kirkegaard; José R de la Torre; Holger Daims; Michael Wagner
Journal:  Front Microbiol       Date:  2018-02-14       Impact factor: 5.640

5.  Vitamin Biosynthesis by Human Gut Butyrate-Producing Bacteria and Cross-Feeding in Synthetic Microbial Communities.

Authors:  Eva C Soto-Martin; Ines Warnke; Freda M Farquharson; Marilena Christodoulou; Graham Horgan; Muriel Derrien; Jean-Michel Faurie; Harry J Flint; Sylvia H Duncan; Petra Louis
Journal:  mBio       Date:  2020-07-14       Impact factor: 7.867

6.  The pyruvate:ferredoxin oxidoreductase of the thermophilic acetogen, Thermoanaerobacter kivui.

Authors:  Alexander Katsyv; Marie Charlotte Schoelmerich; Mirko Basen; Volker Müller
Journal:  FEBS Open Bio       Date:  2021-04-04       Impact factor: 2.693

7.  Obligately aerobic human gut microbe expresses an oxygen resistant tungsten-containing oxidoreductase for detoxifying gut aldehydes.

Authors:  Michael P Thorgersen; Gerrit J Schut; Farris L Poole; Dominik K Haja; Saisuki Putumbaka; Harriet I Mycroft; Willem J de Vries; Michael W W Adams
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  7 in total

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