Literature DB >> 19893492

Immature small ribosomal subunits can engage in translation initiation in Saccharomyces cerevisiae.

Julien Soudet1, Jean-Paul Gélugne, Kamila Belhabich-Baumas, Michèle Caizergues-Ferrer, Annie Mougin.   

Abstract

It is generally assumed that, in Saccharomyces cerevisiae, immature 40S ribosomal subunits are not competent for translation initiation. Here, we show by different approaches that, in wild-type conditions, a portion of pre-40S particles (pre-SSU) associate with translating ribosomal complexes. When cytoplasmic 20S pre-rRNA processing is impaired, as in Rio1p- or Nob1p-depleted cells, a large part of pre-SSUs is associated with translating ribosomes complexes. Loading of pre-40S particles onto mRNAs presumably uses the canonical pathway as translation-initiation factors interact with 20S pre-rRNA. However, translation initiation is not required for 40S ribosomal subunit maturation. We also provide evidence suggesting that cytoplasmic 20S pre-rRNAs that associate with translating complexes are turned over by the no go decay (NGD) pathway, a process known to degrade mRNAs on which ribosomes are stalled. We propose that the cytoplasmic fate of 20S pre-rRNA is determined by the balance between pre-SSU processing kinetics and sensing of ribosome-like particles loaded onto mRNAs by the NGD machinery, which acts as an ultimate ribosome quality check point.

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Year:  2009        PMID: 19893492      PMCID: PMC2808361          DOI: 10.1038/emboj.2009.307

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  48 in total

1.  Domain III of Saccharomyces cerevisiae 25 S ribosomal RNA: its role in binding of ribosomal protein L25 and 60 S subunit formation.

Authors:  C A van Beekvelt; E A Kooi; M de Graaff-Vincent; J Riet; J Venema; H A Raué
Journal:  J Mol Biol       Date:  2000-02-11       Impact factor: 5.469

Review 2.  Identifying effects of snoRNA-guided modifications on the synthesis and function of the yeast ribosome.

Authors:  Wayne A Decatur; Xue-hai Liang; Dorota Piekna-Przybylska; Maurille J Fournier
Journal:  Methods Enzymol       Date:  2007       Impact factor: 1.600

3.  A late-acting quality control process for mature eukaryotic rRNAs.

Authors:  Frederick J LaRiviere; Sarah E Cole; Daniel J Ferullo; Melissa J Moore
Journal:  Mol Cell       Date:  2006-11-17       Impact factor: 17.970

4.  Endonucleolytic cleavage of eukaryotic mRNAs with stalls in translation elongation.

Authors:  Meenakshi K Doma; Roy Parker
Journal:  Nature       Date:  2006-03-23       Impact factor: 49.962

Review 5.  Mechanism of ribosomal subunit joining during eukaryotic translation initiation.

Authors:  Michael G Acker; Jon R Lorsch
Journal:  Biochem Soc Trans       Date:  2008-08       Impact factor: 5.407

Review 6.  The post-transcriptional steps of eukaryotic ribosome biogenesis.

Authors:  A K Henras; J Soudet; M Gérus; S Lebaron; M Caizergues-Ferrer; A Mougin; Y Henry
Journal:  Cell Mol Life Sci       Date:  2008-08       Impact factor: 9.261

7.  A subcomplex of three eIF3 subunits binds eIF1 and eIF5 and stimulates ribosome binding of mRNA and tRNA(i)Met.

Authors:  L Phan; L W Schoenfeld; L Valásek; K H Nielsen; A G Hinnebusch
Journal:  EMBO J       Date:  2001-06-01       Impact factor: 11.598

8.  Related eIF3 subunits TIF32 and HCR1 interact with an RNA recognition motif in PRT1 required for eIF3 integrity and ribosome binding.

Authors:  L Valásek; L Phan; L W Schoenfeld; V Valásková; A G Hinnebusch
Journal:  EMBO J       Date:  2001-02-15       Impact factor: 11.598

9.  Linear ubiquitin fusion to Rps31 and its subsequent cleavage are required for the efficient production and functional integrity of 40S ribosomal subunits.

Authors:  Thierry Lacombe; Juan J García-Gómez; Jesús de la Cruz; Daniela Roser; Ed Hurt; Patrick Linder; Dieter Kressler
Journal:  Mol Microbiol       Date:  2009-02-04       Impact factor: 3.501

10.  A convergence of rRNA and mRNA quality control pathways revealed by mechanistic analysis of nonfunctional rRNA decay.

Authors:  Sarah E Cole; Frederick J LaRiviere; Christopher N Merrikh; Melissa J Moore
Journal:  Mol Cell       Date:  2009-05-14       Impact factor: 17.970

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  40 in total

Review 1.  Novel endoribonucleases as central players in various pathways of eukaryotic RNA metabolism.

Authors:  Rafal Tomecki; Andrzej Dziembowski
Journal:  RNA       Date:  2010-07-30       Impact factor: 4.942

2.  Roles of Dim2 in ribosome assembly.

Authors:  Heather A Woolls; Allison C Lamanna; Katrin Karbstein
Journal:  J Biol Chem       Date:  2010-11-12       Impact factor: 5.157

3.  Dissection of Dom34-Hbs1 reveals independent functions in two RNA quality control pathways.

Authors:  Antonia M G van den Elzen; Julien Henri; Noureddine Lazar; María Eugenia Gas; Dominique Durand; François Lacroute; Magali Nicaise; Herman van Tilbeurgh; Bertrand Séraphin; Marc Graille
Journal:  Nat Struct Mol Biol       Date:  2010-11-21       Impact factor: 15.369

4.  Ribosome assembly factors prevent premature translation initiation by 40S assembly intermediates.

Authors:  Bethany S Strunk; Cherisse R Loucks; Min Su; Harish Vashisth; Shanshan Cheng; Justin Schilling; Charles L Brooks; Katrin Karbstein; Georgios Skiniotis
Journal:  Science       Date:  2011-08-11       Impact factor: 47.728

5.  A translation-like cycle is a quality control checkpoint for maturing 40S ribosome subunits.

Authors:  Bethany S Strunk; Megan N Novak; Crystal L Young; Katrin Karbstein
Journal:  Cell       Date:  2012-07-06       Impact factor: 41.582

6.  Why Dom34 stimulates growth of cells with defects of 40S ribosomal subunit biosynthesis.

Authors:  Arpita Bhattacharya; Kerri B McIntosh; Ian M Willis; Jonathan R Warner
Journal:  Mol Cell Biol       Date:  2010-09-27       Impact factor: 4.272

7.  An active role for the ribosome in determining the fate of oxidized mRNA.

Authors:  Carrie L Simms; Benjamin H Hudson; John W Mosior; Ali S Rangwala; Hani S Zaher
Journal:  Cell Rep       Date:  2014-11-13       Impact factor: 9.423

8.  The von Hippel-Lindau protein pVHL inhibits ribosome biogenesis and protein synthesis.

Authors:  Wen-Ting Zhao; Cheng-Fu Zhou; Xue-Bing Li; Yun-Fang Zhang; Li Fan; Jerry Pelletier; Jing Fang
Journal:  J Biol Chem       Date:  2013-04-23       Impact factor: 5.157

9.  Immature large ribosomal subunits containing the 7S pre-rRNA can engage in translation in Saccharomyces cerevisiae.

Authors:  Olga Rodríguez-Galán; Juan J García-Gómez; Dieter Kressler; Jesús de la Cruz
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

10.  Cracking pre-40S ribosomal subunit structure by systematic analyses of RNA-protein cross-linking.

Authors:  Sander Granneman; Elisabeth Petfalski; Agata Swiatkowska; David Tollervey
Journal:  EMBO J       Date:  2010-05-07       Impact factor: 11.598

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