Literature DB >> 19889984

How to mark off paths on the protein energy landscape.

Martin Gruebele1.   

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Year:  2009        PMID： 19889984      PMCID： PMC2776451          DOI： 10.1073/pnas.0910764106

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


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  20 in total

1.  Using path sampling to build better Markovian state models: predicting the folding rate and mechanism of a tryptophan zipper beta hairpin.

Authors:  Nina Singhal; Christopher D Snow; Vijay S Pande
Journal:  J Chem Phys       Date:  2004-07-01       Impact factor: 3.488

Review 2.  Downhill protein folding: evolution meets physics.

Authors:  Martin Gruebele
Journal:  C R Biol       Date:  2005-04-01       Impact factor: 1.583

3.  Sub-microsecond protein folding.

Authors:  Jan Kubelka; Thang K Chiu; David R Davies; William A Eaton; James Hofrichter
Journal:  J Mol Biol       Date:  2006-03-31       Impact factor: 5.469

4.  The design and characterization of two proteins with 88% sequence identity but different structure and function.

Authors:  Patrick A Alexander; Yanan He; Yihong Chen; John Orban; Philip N Bryan
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-03       Impact factor: 11.205

5.  Automatic discovery of metastable states for the construction of Markov models of macromolecular conformational dynamics.

Authors:  John D Chodera; Nina Singhal; Vijay S Pande; Ken A Dill; William C Swope
Journal:  J Chem Phys       Date:  2007-04-21       Impact factor: 3.488

6.  An experimental survey of the transition between two-state and downhill protein folding scenarios.

Authors:  Feng Liu; Deguo Du; Amelia A Fuller; Jennifer E Davoren; Peter Wipf; Jeffery W Kelly; Martin Gruebele
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-11       Impact factor: 11.205

7.  The energy landscapes and motions of proteins.

Authors:  H Frauenfelder; S G Sligar; P G Wolynes
Journal:  Science       Date:  1991-12-13       Impact factor: 47.728

8.  Kinetic evidence for incorrectly folded intermediate states in the refolding of denatured proteins.

Authors:  A Ikai; C Tanford
Journal:  Nature       Date:  1971-03-12       Impact factor: 49.962

9.  Funnels, pathways, and the energy landscape of protein folding: a synthesis.

Authors:  J D Bryngelson; J N Onuchic; N D Socci; P G Wolynes
Journal:  Proteins       Date:  1995-03

10.  Critical assessment of methods of protein structure prediction-Round VII.

Authors:  John Moult; Krzysztof Fidelis; Andriy Kryshtafovych; Burkhard Rost; Tim Hubbard; Anna Tramontano
Journal:  Proteins       Date:  2007
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  2 in total

1.  Direct observation of kinetic traps associated with structural transformations leading to multiple pathways of S-layer assembly.

Authors:  Seong-Ho Shin; Sungwook Chung; Babak Sanii; Luis R Comolli; Carolyn R Bertozzi; James J De Yoreo
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-20       Impact factor: 11.205

Review 2.  UV resonance Raman investigations of peptide and protein structure and dynamics.

Authors:  Sulayman A Oladepo; Kan Xiong; Zhenmin Hong; Sanford A Asher; Joseph Handen; Igor K Lednev
Journal:  Chem Rev       Date:  2012-02-15       Impact factor: 60.622
  2 in total

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