Literature DB >> 19889533

High-content screening of primary neurons: ready for prime time.

Aaron Daub1, Punita Sharma, Steven Finkbeiner.   

Abstract

High-content screening (HCS), historically limited to drug-development companies, is now a powerful and affordable technology for academic researchers. Through automated routines, this technology acquires large datasets of fluorescence images depicting the functional states of thousands to millions of cells. Information on shapes, textures, intensities, and localizations is then used to create unique representations, or 'phenotypic signatures,' of each cell. These signatures quantify physiologic or diseased states, for example, dendritic arborization, drug response, or cell coping strategies. Live-cell imaging in HCS adds the ability to correlate cellular events at different points in time, thereby allowing sensitivities and observations not possible with fixed endpoint analysis. HCS with live-cell imaging therefore provides an unprecedented capability to detect spatiotemporal changes in cells and is particularly suited for time-dependent, stochastic processes such as neurodegenerative disorders.

Entities:  

Mesh:

Year:  2009        PMID: 19889533      PMCID: PMC2787795          DOI: 10.1016/j.conb.2009.10.002

Source DB:  PubMed          Journal:  Curr Opin Neurobiol        ISSN: 0959-4388            Impact factor:   6.627


  45 in total

1.  Non-cell autonomous effect of glia on motor neurons in an embryonic stem cell-based ALS model.

Authors:  Francesco Paolo Di Giorgio; Monica A Carrasco; Michelle C Siao; Tom Maniatis; Kevin Eggan
Journal:  Nat Neurosci       Date:  2007-04-15       Impact factor: 24.884

2.  What's wrong with drug screening today.

Authors:  Garry P Nolan
Journal:  Nat Chem Biol       Date:  2007-04       Impact factor: 15.040

Review 3.  Advances in fluorescent protein technology.

Authors:  Nathan C Shaner; George H Patterson; Michael W Davidson
Journal:  J Cell Sci       Date:  2007-12-15       Impact factor: 5.285

4.  Stem cells and drug discovery: the beginning of a new era?

Authors:  Lee L Rubin
Journal:  Cell       Date:  2008-02-22       Impact factor: 41.582

Review 5.  Current trends in shape and texture analysis in neurology: aspects of the morphological substrate of volume and wiring transmission.

Authors:  Marco B L Rocchi; Davide Sisti; Maria Cristina Albertini; Laura Teodori
Journal:  Brain Res Rev       Date:  2007-04-13

6.  Bright far-red fluorescent protein for whole-body imaging.

Authors:  Dmitry Shcherbo; Ekaterina M Merzlyak; Tatiana V Chepurnykh; Arkady F Fradkov; Galina V Ermakova; Elena A Solovieva; Konstantin A Lukyanov; Ekaterina A Bogdanova; Andrey G Zaraisky; Sergey Lukyanov; Dmitriy M Chudakov
Journal:  Nat Methods       Date:  2007-08-26       Impact factor: 28.547

7.  Induced pluripotent stem cells generated without viral integration.

Authors:  Matthias Stadtfeld; Masaki Nagaya; Jochen Utikal; Gordon Weir; Konrad Hochedlinger
Journal:  Science       Date:  2008-09-25       Impact factor: 47.728

8.  Work flow for multiplexing siRNA assays by solid-phase reverse transfection in multiwell plates.

Authors:  Holger Erfle; Beate Neumann; Phill Rogers; Jutta Bulkescher; Jan Ellenberg; Rainer Pepperkok
Journal:  J Biomol Screen       Date:  2008-07-03

9.  In-tube transfection improves the efficiency of gene transfer in primary neuronal cultures.

Authors:  Marc W Halterman; Rita Giuliano; Chris Dejesus; Nina F Schor
Journal:  J Neurosci Methods       Date:  2008-10-30       Impact factor: 2.390

10.  Exploration of new chromophore structures leads to the identification of improved blue fluorescent proteins.

Authors:  Hui-wang Ai; Nathan C Shaner; Zihao Cheng; Roger Y Tsien; Robert E Campbell
Journal:  Biochemistry       Date:  2007-04-20       Impact factor: 3.162

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  19 in total

Review 1.  Proceedings: consideration of genetics in the design of induced pluripotent stem cell-based models of complex disease.

Authors:  Uta Grieshammer; Kelly A Shepard
Journal:  Stem Cells Transl Med       Date:  2014-11       Impact factor: 6.940

2.  Scaffold Ranking and Positional Scanning Identify Novel Neurite Outgrowth Promoters with Nanomolar Potency.

Authors:  Hassan Al-Ali; Ginamarie Debevec; Radleigh G Santos; Richard A Houghten; Jennifer C Davis; Adel Nefzi; Vance P Lemmon; John L Bixby; Marc A Giulianotti
Journal:  ACS Med Chem Lett       Date:  2018-09-24       Impact factor: 4.345

Review 3.  Clinical Trials in a Dish: The Potential of Pluripotent Stem Cells to Develop Therapies for Neurodegenerative Diseases.

Authors:  Kelly M Haston; Steven Finkbeiner
Journal:  Annu Rev Pharmacol Toxicol       Date:  2015-10-28       Impact factor: 13.820

4.  Mutant LRRK2 toxicity in neurons depends on LRRK2 levels and synuclein but not kinase activity or inclusion bodies.

Authors:  Gaia Skibinski; Ken Nakamura; Mark R Cookson; Steven Finkbeiner
Journal:  J Neurosci       Date:  2014-01-08       Impact factor: 6.167

Review 5.  Cell-based screening: extracting meaning from complex data.

Authors:  Steven Finkbeiner; Michael Frumkin; Paul D Kassner
Journal:  Neuron       Date:  2015-04-08       Impact factor: 17.173

6.  High-throughput screening in primary neurons.

Authors:  Punita Sharma; D Michael Ando; Aaron Daub; Julia A Kaye; Steven Finkbeiner
Journal:  Methods Enzymol       Date:  2012       Impact factor: 1.600

7.  On-chip 3D neuromuscular model for drug screening and precision medicine in neuromuscular disease.

Authors:  Tatsuya Osaki; Sebastien G M Uzel; Roger D Kamm
Journal:  Nat Protoc       Date:  2020-01-13       Impact factor: 13.491

8.  Automatic segmentation and supervised learning-based selection of nuclei in cancer tissue images.

Authors:  Kaustav Nandy; Prabhakar R Gudla; Ryan Amundsen; Karen J Meaburn; Tom Misteli; Stephen J Lockett
Journal:  Cytometry A       Date:  2012-07-31       Impact factor: 4.355

9.  Nrf2 mitigates LRRK2- and α-synuclein-induced neurodegeneration by modulating proteostasis.

Authors:  Gaia Skibinski; Vicky Hwang; Dale Michael Ando; Aaron Daub; Alicia K Lee; Abinaya Ravisankar; Sara Modan; Mariel M Finucane; Benjamin A Shaby; Steven Finkbeiner
Journal:  Proc Natl Acad Sci U S A       Date:  2016-12-27       Impact factor: 11.205

10.  Drug discovery in Parkinson's disease-Update and developments in the use of cellular models.

Authors:  Gaia Skibinski; Steven Finkbeiner
Journal:  Int J High Throughput Screen       Date:  2011-06
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