Literature DB >> 1988948

Substrate channeling in glycolysis: a phantom phenomenon.

X M Wu1, H Gutfreund, S Lakatos, P B Chock.   

Abstract

It has been proposed that glycolytic enzymes form multienzyme complexes for direct transfer of metabolites from the producing enzyme to the utilizing one. Reexamination of the supporting evidence, which involves the transfer of NADH between its complexes with glycerol-3-phosphate dehydrogenase (alpha-glycerol phosphate dehydrogenase, GPDH; EC 1.1.1.8) and with L-lactate dehydrogenase (LDH; EC 1.1.1.27), has shown that the supporting evidence is based on misinterpretation of the kinetics of ligand exchange. Srivastava et al. have responded with a revision of their own and criticism of our data. To clarify this problem, we have carried out detailed kinetic studies on NADH binding to GPHD and LDH and on the displacement of enzyme-bound NADH by LDH or GPDH. The experiments were conducted at 10 degrees C in 50 mM Hepes, pH 7.5/100 mM KCl/1 mM EDTA/1 mM 2-mercaptoethanol, using rabbit muscle GPDH and LDH. The results show that the kinetic patterns exhibited by the displacement of NADH-bound enzyme by either GPDH or LDH are consistent with a dissociative mechanism but not with a direct transfer mechanism. Theoretical analysis shows that a combined dissociative and direct transfer mechanism can explain the transient kinetic data reported by Srivastava et al. if, and only if, a majority (approximately 90%) of the enzyme present in lower concentration exists as a complex with the second enzyme. However, data from tracer and traditional sedimentation equilibrium and from gel filtration experiments show that LDH and GPDH do not form complexes in the presence of saturating NADH concentration when the enzyme concentrations are ranged between 4 and 50 microM, a concentration equal to or greater than that used by Srivastava et al. Our results demonstrate that GPDH and LDH do not form multienzyme complex and the transfer of NADH between these enzymes proceeds via a dissociative mechanism.

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Year:  1991        PMID: 1988948      PMCID: PMC50838          DOI: 10.1073/pnas.88.2.497

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  16 in total

1.  Kinetic evidence for interaction between aldolase and D-glyceraldehyde-3-phosphate dehydrogenase.

Authors:  J Ovádi; T Keleti
Journal:  Eur J Biochem       Date:  1978-04

2.  Evidence that 1,3-bisphosphoglycerate dissociation from phosphoglycerate kinase is an intrinsically rapid reaction step.

Authors:  J Kvassman; G Pettersson
Journal:  Eur J Biochem       Date:  1989-12-08

3.  Direct transfer of NADH between alpha-glycerol phosphate dehydrogenase and lactate dehydrogenase: fact or misinterpretation?

Authors:  D K Srivastava; P Smolen; G F Betts; T Fukushima; H O Spivey; S A Bernhard
Journal:  Proc Natl Acad Sci U S A       Date:  1989-09       Impact factor: 11.205

4.  A parameterized overspeeding method for the rapid attainment of low-speed sedimentation equilibrium.

Authors:  R C Chatelier
Journal:  Anal Biochem       Date:  1988-11-15       Impact factor: 3.365

5.  Reexamination of the kinetics of the transfer of NADH between its complexes with glycerol-3-phosphate dehydrogenase and with lactate dehydrogenase.

Authors:  P B Chock; H Gutfreund
Journal:  Proc Natl Acad Sci U S A       Date:  1988-12       Impact factor: 11.205

6.  An automated method for determination of the sedimentation coefficient of macromolecules using a preparative centrifuge.

Authors:  A K Attri; A P Minton
Journal:  Anal Biochem       Date:  1984-02       Impact factor: 3.365

7.  Mechanism of 1,3-bisphosphoglycerate transfer from phosphoglycerate kinase to glyceraldehyde-3-phosphate dehydrogenase.

Authors:  J Kvassman; G Pettersson
Journal:  Eur J Biochem       Date:  1989-12-08

8.  Direct transfer of reduced nicotinamide adenine dinucleotide from glyceraldehyde-3-phosphate dehydrogenase to liver alcohol dehydrogenase.

Authors:  D K Srivastava; S A Bernhard
Journal:  Biochemistry       Date:  1984-09-25       Impact factor: 3.162

9.  A study of the kinetics and mechanism of rabbit muscle L-glycerol 3-phosphate dehydrogenase.

Authors:  P Bentley; F M Dickinson
Journal:  Biochem J       Date:  1974-10       Impact factor: 3.857

10.  Transfer of 1,3-diphosphoglycerate between glyceraldehyde-3-phosphate dehydrogenase and 3-phosphoglycerate kinase via an enzyme-substrate-enzyme complex.

Authors:  J P Weber; S A Bernhard
Journal:  Biochemistry       Date:  1982-08-17       Impact factor: 3.162

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  16 in total

1.  Metabolite channeling versus free diffusion: reinterpretation of aldolase-catalysed inactivation of glyceraldehyde-3-phosphate dehydrogenase.

Authors:  B G Vértessy; M Vas
Journal:  Biochem J       Date:  1992-09-15       Impact factor: 3.857

2.  Synthetic metabolic pipelines.

Authors:  Matthew P DeLisa; Robert J Conrado
Journal:  Nat Biotechnol       Date:  2009-08       Impact factor: 54.908

3.  Control theory of metabolic channelling.

Authors:  B N Kholodenko; M Cascante; H V Westerhoff
Journal:  Mol Cell Biochem       Date:  1995-02-23       Impact factor: 3.396

4.  A postreductionist framework for protein biochemistry.

Authors:  Tom Laue; Borries Demeler
Journal:  Nat Chem Biol       Date:  2011-06       Impact factor: 15.040

5.  Flight muscle function in Drosophila requires colocalization of glycolytic enzymes.

Authors:  K Wojtas; N Slepecky; L von Kalm; D Sullivan
Journal:  Mol Biol Cell       Date:  1997-09       Impact factor: 4.138

6.  Modeling oxygen requirements in ischemic cardiomyocytes.

Authors:  Anthony D McDougal; C Forbes Dewey
Journal:  J Biol Chem       Date:  2017-05-09       Impact factor: 5.157

Review 7.  Control theory of metabolic channelling.

Authors:  B N Kholodenko; M Cascante; H V Westerhoff
Journal:  Mol Cell Biochem       Date:  1994 Apr-May       Impact factor: 3.396

8.  19F NMR measurements of the rotational mobility of proteins in vivo.

Authors:  S P Williams; P M Haggie; K M Brindle
Journal:  Biophys J       Date:  1997-01       Impact factor: 4.033

Review 9.  Mechanisms and Effects of Substrate Channelling in Enzymatic Cascades.

Authors:  Svyatoslav Kondrat; Eric von Lieres
Journal:  Methods Mol Biol       Date:  2022

10.  An enzyme-trap approach allows isolation of intermediates in cobalamin biosynthesis.

Authors:  Evelyne Deery; Susanne Schroeder; Andrew D Lawrence; Samantha L Taylor; Arefeh Seyedarabi; Jitka Waterman; Keith S Wilson; David Brown; Michael A Geeves; Mark J Howard; Richard W Pickersgill; Martin J Warren
Journal:  Nat Chem Biol       Date:  2012-10-07       Impact factor: 15.040

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