Literature DB >> 19879883

Nucleotide excision repair genes are expressed at low levels and are not detectably inducible in Caenorhabditis elegans somatic tissues, but their function is required for normal adult life after UVC exposure.

Windy A Boyd1, Tracey L Crocker, Ana M Rodriguez, Maxwell C K Leung, D Wade Lehmann, Jonathan H Freedman, Ben Van Houten, Joel N Meyer.   

Abstract

We performed experiments to characterize the inducibility of nucleotide excision repair (NER) in Caenorhabditis elegans, and to examine global gene expression in NER-deficient and -proficient strains as well as germline vs. somatic tissues, with and without genotoxic stress. We also carried out experiments to elucidate the importance of NER in the adult life of C. elegans under genotoxin-stressed and control conditions. Adult lifespan was not detectably different between wild-type and NER-deficient xpa-1 nematodes under control conditions. However, exposure to 6J/m(2)/day of ultraviolet C radiation (UVC) decreased lifespan in xpa-1 nematodes more than a dose of 100 J/m(2)/day in wild-type. Similar differential sensitivities were observed for adult size and feeding. Remarkably, global gene expression was nearly identical in young adult wild-type and xpa-1 nematodes, both in control conditions and 3h after exposure to 50 J/m(2) UVC. Neither NER genes nor repair activity were detectably inducible in young adults that lacked germ cells and developing embryos (glp-1 strain). However, expression levels of dozens of NER and other DNA damage response genes were much (5-30-fold) lower in adults lacking germ cells and developing embryos, suggesting that somatic and post-mitotic cells have a much lower DNA repair ability. Finally, we describe a refinement of our DNA damage assay that allows damage measurement in single nematodes.

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Year:  2010        PMID: 19879883      PMCID: PMC2799044          DOI: 10.1016/j.mrfmmm.2009.10.008

Source DB:  PubMed          Journal:  Mutat Res        ISSN: 0027-5107            Impact factor:   2.433


  52 in total

1.  Extra-long PCR, an identifier of DNA adducts in single nematodes (Caenorhabditis elegans).

Authors:  Deborah A Neher; Stephen R Stürzenbaum
Journal:  Comp Biochem Physiol C Toxicol Pharmacol       Date:  2006-10-21       Impact factor: 3.228

Review 2.  DNA repair in mammalian cells : Nucleotide excision repair: variations on versatility.

Authors:  T Nouspikel
Journal:  Cell Mol Life Sci       Date:  2009-03       Impact factor: 9.261

3.  The relative roles of three DNA repair pathways in preventing Caenorhabditis elegans mutation accumulation.

Authors:  Dee R Denver; Seth Feinberg; Catherine Steding; Matthew D Durbin; Michael Lynch
Journal:  Genetics       Date:  2006-06-18       Impact factor: 4.562

Review 4.  Techniques for analysis, sorting, and dispensing of C. elegans on the COPAS flow-sorting system.

Authors:  Rock Pulak
Journal:  Methods Mol Biol       Date:  2006

5.  DNA damage induced nucleotide excision repair in Saccharomyces cerevisiae.

Authors:  Rakesh Kumar Singh; Malini Krishna
Journal:  Mol Cell Biochem       Date:  2006-04-11       Impact factor: 3.396

6.  Developmental modulation of nonhomologous end joining in Caenorhabditis elegans.

Authors:  Iuval Clejan; Julie Boerckel; Shawn Ahmed
Journal:  Genetics       Date:  2006-05-15       Impact factor: 4.562

7.  Application of a mathematical model to describe the effects of chlorpyrifos on Caenorhabditis elegans development.

Authors:  Windy A Boyd; Marjolein V Smith; Grace E Kissling; Julie R Rice; Daniel W Snyder; Christopher J Portier; Jonathan H Freedman
Journal:  PLoS One       Date:  2009-09-15       Impact factor: 3.240

8.  A discrete time model for the analysis of medium-throughput C. elegans growth data.

Authors:  Marjolein V Smith; Windy A Boyd; Grace E Kissling; Julie R Rice; Daniel W Snyder; Christopher J Portier; Jonathan H Freedman
Journal:  PLoS One       Date:  2009-09-15       Impact factor: 3.240

Review 9.  Caenorhabditis elegans: an emerging model in biomedical and environmental toxicology.

Authors:  Maxwell C K Leung; Phillip L Williams; Alexandre Benedetto; Catherine Au; Kirsten J Helmcke; Michael Aschner; Joel N Meyer
Journal:  Toxicol Sci       Date:  2008-06-19       Impact factor: 4.849

10.  Transcriptional profiling in C. elegans suggests DNA damage dependent apoptosis as an ancient function of the p53 family.

Authors:  Sebastian Greiss; Björn Schumacher; Kaj Grandien; Jonathan Rothblatt; Anton Gartner
Journal:  BMC Genomics       Date:  2008-07-15       Impact factor: 3.969

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  29 in total

1.  Caenorhabditis elegans as a model in developmental toxicology.

Authors:  Windy A Boyd; Marjolein V Smith; Jonathan H Freedman
Journal:  Methods Mol Biol       Date:  2012

2.  Effects of methyl and inorganic mercury exposure on genome homeostasis and mitochondrial function in Caenorhabditis elegans.

Authors:  Lauren H Wyatt; Anthony L Luz; Xiou Cao; Laura L Maurer; Ashley M Blawas; Alejandro Aballay; William K Y Pan; Joel N Meyer
Journal:  DNA Repair (Amst)       Date:  2017-02-13

3.  Zebrafish CYP1A expression in transgenic Caenorhabditis elegans protects from exposures to benzo[a]pyrene and a complex polycyclic aromatic hydrocarbon mixture.

Authors:  Jamie B Harris; Jessica H Hartman; Anthony L Luz; Joanna Y Wilson; Audrey Dinyari; Joel N Meyer
Journal:  Toxicology       Date:  2020-05-01       Impact factor: 4.221

4.  Differential regulation of DNA damage response activation between somatic and germline cells in Caenorhabditis elegans.

Authors:  J Vermezovic; L Stergiou; M O Hengartner; F d'Adda di Fagagna
Journal:  Cell Death Differ       Date:  2012-06-15       Impact factor: 15.828

5.  Caenorhabditis elegans generates biologically relevant levels of genotoxic metabolites from aflatoxin B1 but not benzo[a]pyrene in vivo.

Authors:  Maxwell C K Leung; Jared V Goldstone; Windy A Boyd; Jonathan H Freedman; Joel N Meyer
Journal:  Toxicol Sci       Date:  2010-09-23       Impact factor: 4.849

6.  NER and HR pathways act sequentially to promote UV-C-induced germ cell apoptosis in Caenorhabditis elegans.

Authors:  L Stergiou; R Eberhard; K Doukoumetzidis; M O Hengartner
Journal:  Cell Death Differ       Date:  2010-12-10       Impact factor: 15.828

7.  Active transcriptomic and proteomic reprogramming in the C. elegans nucleotide excision repair mutant xpa-1.

Authors:  Henok Kassahun; Hilde Nilsen
Journal:  Worm       Date:  2013-12-05

8.  Quantitative PCR-based measurement of nuclear and mitochondrial DNA damage and repair in mammalian cells.

Authors:  Amy Furda; Janine H Santos; Joel N Meyer; Bennett Van Houten
Journal:  Methods Mol Biol       Date:  2014

9.  Newly Revised Quantitative PCR-Based Assay for Mitochondrial and Nuclear DNA Damage.

Authors:  Laurie H Sanders; Jeremy P Rouanet; Evan H Howlett; Tess C Leuthner; John P Rooney; J Timothy Greenamyre; Joel N Meyer
Journal:  Curr Protoc Toxicol       Date:  2018-05-18

10.  Analysis of DNA damage and repair in nuclear and mitochondrial DNA of animal cells using quantitative PCR.

Authors:  Amy M Furda; Amanda Smith Bess; Joel N Meyer; Bennett Van Houten
Journal:  Methods Mol Biol       Date:  2012
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