Literature DB >> 19878454

Statistical methods in spatial genetics.

Gilles Guillot1, Raphaël Leblois, Aurélie Coulon, Alain C Frantz.   

Abstract

The joint analysis of spatial and genetic data is rapidly becoming the norm in population genetics. More and more studies explicitly describe and quantify the spatial organization of genetic variation and try to relate it to underlying ecological processes. As it has become increasingly difficult to keep abreast with the latest methodological developments, we review the statistical toolbox available to analyse population genetic data in a spatially explicit framework. We mostly focus on statistical concepts but also discuss practical aspects of the analytical methods, highlighting not only the potential of various approaches but also methodological pitfalls.

Mesh:

Year:  2009        PMID: 19878454     DOI: 10.1111/j.1365-294X.2009.04410.x

Source DB:  PubMed          Journal:  Mol Ecol        ISSN: 0962-1083            Impact factor:   6.185


  70 in total

1.  An empirical assessment of individual-based population genetic statistical techniques: application to British pig breeds.

Authors:  S Wilkinson; C Haley; L Alderson; P Wiener
Journal:  Heredity (Edinb)       Date:  2010-06-16       Impact factor: 3.821

2.  Patterns of spatial genetic structuring in the endangered limpet Patella ferruginea: implications for the conservation of a Mediterranean endemic.

Authors:  Marco Casu; Georgina A Rivera-Ingraham; Piero Cossu; Tiziana Lai; Daria Sanna; Gian Luca Dedola; Rossana Sussarellu; Gabriella Sella; Benedetto Cristo; Marco Curini-Galletti; José Carlos García-Gómez; Free Espinosa
Journal:  Genetica       Date:  2011-10       Impact factor: 1.082

3.  Estimating Barriers to Gene Flow from Distorted Isolation-by-Distance Patterns.

Authors:  Harald Ringbauer; Alexander Kolesnikov; David L Field; Nicholas H Barton
Journal:  Genetics       Date:  2018-01-08       Impact factor: 4.562

4.  A new eigenfunction spatial analysis describing population genetic structure.

Authors:  José Alexandre Felizola Diniz-Filho; João Vitor Barnez P L Diniz; Thiago Fernando Rangel; Thannya Nascimento Soares; Mariana Pires de Campos Telles; Rosane Garcia Collevatti; Luis Mauricio Bini
Journal:  Genetica       Date:  2013-10-27       Impact factor: 1.082

5.  Low genetic diversity and strong population structure shaped by anthropogenic habitat fragmentation in a critically endangered primate, Trachypithecus leucocephalus.

Authors:  W Wang; Y Qiao; S Li; W Pan; M Yao
Journal:  Heredity (Edinb)       Date:  2017-02-15       Impact factor: 3.821

6.  Comparison of different genetic distances to test isolation by distance between populations.

Authors:  M Séré; S Thévenon; A M G Belem; T De Meeûs
Journal:  Heredity (Edinb)       Date:  2017-05-24       Impact factor: 3.821

7.  Gaining relevance from the random: Interpreting observed spatial heterogeneity.

Authors:  Rachel Carroll; Shanshan Zhao
Journal:  Spat Spatiotemporal Epidemiol       Date:  2018-01-31

8.  Estimation of effective population size in continuously distributed populations: there goes the neighborhood.

Authors:  M C Neel; K McKelvey; N Ryman; M W Lloyd; R Short Bull; F W Allendorf; M K Schwartz; R S Waples
Journal:  Heredity (Edinb)       Date:  2013-05-08       Impact factor: 3.821

9.  Assessing the genetic landscape of a contact zone: the case of European hare in northeastern Greece.

Authors:  Aglaia Antoniou; Antonios Magoulas; Petros Platis; Georgios Kotoulas
Journal:  Genetica       Date:  2013-02-05       Impact factor: 1.082

10.  The scale of population structure in Arabidopsis thaliana.

Authors:  Alexander Platt; Matthew Horton; Yu S Huang; Yan Li; Alison E Anastasio; Ni Wayan Mulyati; Jon Agren; Oliver Bossdorf; Diane Byers; Kathleen Donohue; Megan Dunning; Eric B Holub; Andrew Hudson; Valérie Le Corre; Olivier Loudet; Fabrice Roux; Norman Warthmann; Detlef Weigel; Luz Rivero; Randy Scholl; Magnus Nordborg; Joy Bergelson; Justin O Borevitz
Journal:  PLoS Genet       Date:  2010-02-12       Impact factor: 5.917

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