Literature DB >> 19877720

In silico prediction of aqueous solubility: the solubility challenge.

M Hewitt1, M T D Cronin, S J Enoch, J C Madden, D W Roberts, J C Dearden.   

Abstract

The dissolution of a chemical into water is a process fundamental to both chemistry and biology. The persistence of a chemical within the environment and the effects of a chemical within the body are dependent primarily upon aqueous solubility. With the well-documented limitations hindering the accurate experimental determination of aqueous solubility, the utilization of predictive methods have been widely investigated and employed. The setting of a solubility challenge by this journal proved an excellent opportunity to explore several different modeling methods, utilizing a supplied dataset of high-quality aqueous solubility measurements. Four contrasting approaches (simple linear regression, artificial neural networks, category formation, and available in silico models) were utilized within our laboratory and the quality of these predictions was assessed. These were chosen to span the multitude of modeling methods now in use, while also allowing for the evaluation of existing commercial solubility models. The conclusions of this study were surprising, in that a simple linear regression approach proved to be superior over more complex modeling methods. Possible explanations for this observation are discussed and also recommendations are made for future solubility prediction.

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Year:  2009        PMID: 19877720     DOI: 10.1021/ci900286s

Source DB:  PubMed          Journal:  J Chem Inf Model        ISSN: 1549-9596            Impact factor:   4.956


  18 in total

1.  Modeling bioconcentration factor (BCF) using mechanistically interpretable descriptors computed from open source tool "PaDEL-Descriptor".

Authors:  Subrata Pramanik; Kunal Roy
Journal:  Environ Sci Pollut Res Int       Date:  2013-10-30       Impact factor: 4.223

2.  In Silico Prediction of Physicochemical Properties of Environmental Chemicals Using Molecular Fingerprints and Machine Learning.

Authors:  Qingda Zang; Kamel Mansouri; Antony J Williams; Richard S Judson; David G Allen; Warren M Casey; Nicole C Kleinstreuer
Journal:  J Chem Inf Model       Date:  2017-01-09       Impact factor: 4.956

3.  Simulation of in vitro dissolution behavior using DDDPlus™.

Authors:  May Almukainzi; Arthur Okumu; Hai Wei; Raimar Löbenberg
Journal:  AAPS PharmSciTech       Date:  2014-11-20       Impact factor: 3.246

4.  Exploratory analysis of kinetic solubility measurements of a small molecule library.

Authors:  Rajarshi Guha; Thomas S Dexheimer; Aimee N Kestranek; Ajit Jadhav; Andrew M Chervenak; Michael G Ford; Anton Simeonov; Gregory P Roth; Craig J Thomas
Journal:  Bioorg Med Chem       Date:  2011-05-13       Impact factor: 3.641

5.  Using MD Simulations To Calculate How Solvents Modulate Solubility.

Authors:  Shuai Liu; Shannon Cao; Kevin Hoang; Kayla L Young; Andrew S Paluch; David L Mobley
Journal:  J Chem Theory Comput       Date:  2016-03-02       Impact factor: 6.006

6.  Deep architectures and deep learning in chemoinformatics: the prediction of aqueous solubility for drug-like molecules.

Authors:  Alessandro Lusci; Gianluca Pollastri; Pierre Baldi
Journal:  J Chem Inf Model       Date:  2013-07-02       Impact factor: 4.956

7.  Uniting cheminformatics and chemical theory to predict the intrinsic aqueous solubility of crystalline druglike molecules.

Authors:  James L McDonagh; Neetika Nath; Luna De Ferrari; Tanja van Mourik; John B O Mitchell
Journal:  J Chem Inf Model       Date:  2014-03-11       Impact factor: 4.956

8.  Selecting, Acquiring, and Using Small Molecule Libraries for High-Throughput Screening.

Authors:  Sivaraman Dandapani; Gerard Rosse; Noel Southall; Joseph M Salvino; Craig J Thomas
Journal:  Curr Protoc Chem Biol       Date:  2012-09-01

9.  Potential inhibitors of methionine aminopeptidase type II identified via structure-based pharmacophore modeling.

Authors:  Safana Albayati; Abdullahi Ibrahim Uba; Kemal Yelekçi
Journal:  Mol Divers       Date:  2021-04-13       Impact factor: 2.943

10.  Binary classification of aqueous solubility using support vector machines with reduction and recombination feature selection.

Authors:  Tiejun Cheng; Qingliang Li; Yanli Wang; Stephen H Bryant
Journal:  J Chem Inf Model       Date:  2011-01-07       Impact factor: 4.956

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