Literature DB >> 19852969

A model for all genomes: the role of transcription factories.

Peter R Cook1.   

Abstract

A model for all genomes involving one major architectural motif is presented: DNA or chromatin loops are tethered to "factories" through the transcription machinery-a polymerase (active or inactive) or its transcription factors (activators or repressors). These loops appear and disappear as polymerases initiate and terminate (and as factors bind and dissociate), so the structure is ever-changing and self-organizing. This model is parsimonious, detailed (and so easily tested), and incorporates elements found in various other models.

Mesh:

Year:  2009        PMID: 19852969     DOI: 10.1016/j.jmb.2009.10.031

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  110 in total

1.  Memories of lost enhancers.

Authors:  Ranjan Sen; Rudolf Grosschedl
Journal:  Genes Dev       Date:  2010-05-15       Impact factor: 11.361

Review 2.  Regulation of transcription in plants: mechanisms controlling developmental switches.

Authors:  Kerstin Kaufmann; Alice Pajoro; Gerco C Angenent
Journal:  Nat Rev Genet       Date:  2010-11-10       Impact factor: 53.242

3.  The genome in space and time: does form always follow function? How does the spatial and temporal organization of a eukaryotic genome reflect and influence its functions?

Authors:  Zhijun Duan; Carl Anthony Blau
Journal:  Bioessays       Date:  2012-07-06       Impact factor: 4.345

4.  Dynamic reconfiguration of long human genes during one transcription cycle.

Authors:  Joshua D Larkin; Peter R Cook; Argyris Papantonis
Journal:  Mol Cell Biol       Date:  2012-05-14       Impact factor: 4.272

5.  DNA double-strand breaks: linking gene expression to chromosome morphology and mobility.

Authors:  Yang Zhang; Dieter W Heermann
Journal:  Chromosoma       Date:  2013-08-28       Impact factor: 4.316

Review 6.  RNA polymerase II C-terminal domain: Tethering transcription to transcript and template.

Authors:  Jeffry L Corden
Journal:  Chem Rev       Date:  2013-09-16       Impact factor: 60.622

7.  The inactive X chromosome adopts a unique three-dimensional conformation that is dependent on Xist RNA.

Authors:  Erik Splinter; Elzo de Wit; Elphège P Nora; Petra Klous; Harmen J G van de Werken; Yun Zhu; Lucas J T Kaaij; Wilfred van Ijcken; Joost Gribnau; Edith Heard; Wouter de Laat
Journal:  Genes Dev       Date:  2011-06-20       Impact factor: 11.361

Review 8.  Chromatin: constructing the big picture.

Authors:  Bas van Steensel
Journal:  EMBO J       Date:  2011-04-28       Impact factor: 11.598

9.  Genome architecture and the role of transcription.

Authors:  Argyris Papantonis; Peter R Cook
Journal:  Curr Opin Cell Biol       Date:  2010-03-29       Impact factor: 8.382

10.  The role of transcription factories-mediated interchromosomal contacts in the organization of nuclear architecture.

Authors:  Julien Dorier; Andrzej Stasiak
Journal:  Nucleic Acids Res       Date:  2010-07-31       Impact factor: 16.971

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