Literature DB >> 19852760

An improved Huffman coding method for archiving text, images, and music characters in DNA.

Menachem Ailenberg1, Ori Rotstein.   

Abstract

An improved Huffman coding method for information storage in DNA is described. The method entails the utilization of modified unambiguous base assignment that enables efficient coding of characters. A plasmid-based library with efficient and reliable information retrieval and assembly with uniquely designed primers is described. We illustrate our approach by synthesis of DNA that encodes text, images, and music, which could easily be retrieved by DNA sequencing using the specific primers. The method is simple and lends itself to automated information retrieval.

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Year:  2009        PMID: 19852760     DOI: 10.2144/000113218

Source DB:  PubMed          Journal:  Biotechniques        ISSN: 0736-6205            Impact factor:   1.993


  12 in total

Review 1.  Trends to store digital data in DNA: an overview.

Authors:  Fatima Akram; Ikram Ul Haq; Haider Ali; Aiman Tahir Laghari
Journal:  Mol Biol Rep       Date:  2018-08-02       Impact factor: 2.316

2.  DNA-LCEB: a high-capacity and mutation-resistant DNA data-hiding approach by employing encryption, error correcting codes, and hybrid twofold and fourfold codon-based strategy for synonymous substitution in amino acids.

Authors:  Ibbad Hafeez; Asifullah Khan; Abdul Qadir
Journal:  Med Biol Eng Comput       Date:  2014-09-07       Impact factor: 2.602

Review 3.  DNA as a digital information storage device: hope or hype?

Authors:  Darshan Panda; Kutubuddin Ali Molla; Mirza Jainul Baig; Alaka Swain; Deeptirekha Behera; Manaswini Dash
Journal:  3 Biotech       Date:  2018-05-04       Impact factor: 2.406

4.  A high storage density strategy for digital information based on synthetic DNA.

Authors:  Shufang Zhang; Beibei Huang; Xiangming Song; Tao Zhang; Hanjie Wang; Yuhong Liu
Journal:  3 Biotech       Date:  2019-08-24       Impact factor: 2.406

5.  An Operational DNA Strand Displacement Encryption Approach.

Authors:  Enqiang Zhu; Xianhang Luo; Chanjuan Liu; Congzhou Chen
Journal:  Nanomaterials (Basel)       Date:  2022-03-06       Impact factor: 5.076

6.  Design of DNA Storage Coding with Enhanced Constraints.

Authors:  Xiangjun Li; Shihua Zhou; Lewang Zou
Journal:  Entropy (Basel)       Date:  2022-08-19       Impact factor: 2.738

7.  Towards practical, high-capacity, low-maintenance information storage in synthesized DNA.

Authors:  Nick Goldman; Paul Bertone; Siyuan Chen; Christophe Dessimoz; Emily M LeProust; Botond Sipos; Ewan Birney
Journal:  Nature       Date:  2013-01-23       Impact factor: 49.962

8.  An Intelligent Optimization Algorithm for Constructing a DNA Storage Code: NOL-HHO.

Authors:  Qiang Yin; Ben Cao; Xue Li; Bin Wang; Qiang Zhang; Xiaopeng Wei
Journal:  Int J Mol Sci       Date:  2020-03-22       Impact factor: 5.923

Review 9.  Uncertainties in synthetic DNA-based data storage.

Authors:  Chengtao Xu; Chao Zhao; Biao Ma; Hong Liu
Journal:  Nucleic Acids Res       Date:  2021-06-04       Impact factor: 16.971

Review 10.  The Essential Component in DNA-Based Information Storage System: Robust Error-Tolerating Module.

Authors:  Aldrin Kay-Yuen Yim; Allen Chi-Shing Yu; Jing-Woei Li; Ada In-Chun Wong; Jacky F C Loo; King Ming Chan; S K Kong; Kevin Y Yip; Ting-Fung Chan
Journal:  Front Bioeng Biotechnol       Date:  2014-11-06
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