Literature DB >> 25195035

DNA-LCEB: a high-capacity and mutation-resistant DNA data-hiding approach by employing encryption, error correcting codes, and hybrid twofold and fourfold codon-based strategy for synonymous substitution in amino acids.

Ibbad Hafeez1,2, Asifullah Khan3, Abdul Qadir2.   

Abstract

Data-hiding in deoxyribonucleic acid (DNA) sequences can be used to develop an organic memory and to track parent genes in an offspring as well as in genetically modified organism. However, the main concerns regarding data-hiding in DNA sequences are the survival of organism and successful extraction of watermark from DNA. This implies that the organism should live and reproduce without any functional disorder even in the presence of the embedded data. Consequently, performing synonymous substitution in amino acids for watermarking becomes a primary option. In this regard, a hybrid watermark embedding strategy that employs synonymous substitution in both twofold and fourfold codons of amino acids is proposed. This work thus presents a high-capacity and mutation-resistant watermarking technique, DNA-LCEB, for hiding secret information in DNA of living organisms. By employing the different types of synonymous codons of amino acids, the data storage capacity has been significantly increased. It is further observed that the proposed DNA-LCEB employing a combination of synonymous substitution, lossless compression, encryption, and Bose-Chaudary-Hocquenghem coding is secure and performs better in terms of both capacity and robustness compared to existing DNA data-hiding schemes. The proposed DNA-LCEB is tested against different mutations, including silent, miss-sense, and non-sense mutations, and provides substantial improvement in terms of mutation detection/correction rate and bits per nucleotide. A web application for DNA-LCEB is available at http://111.68.99.218/DNA-LCEB.

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Year:  2014        PMID: 25195035     DOI: 10.1007/s11517-014-1194-2

Source DB:  PubMed          Journal:  Med Biol Eng Comput        ISSN: 0140-0118            Impact factor:   2.602


  16 in total

1.  Hiding messages in DNA microdots.

Authors:  C T Clelland; V Risca; C Bancroft
Journal:  Nature       Date:  1999-06-10       Impact factor: 49.962

2.  Molecular structure of nucleic acids; a structure for deoxyribose nucleic acid.

Authors:  J D WATSON; F H CRICK
Journal:  Nature       Date:  1953-04-25       Impact factor: 49.962

3.  Secret signatures inside genomic DNA.

Authors:  Masanori Arita; Yoshiaki Ohashi
Journal:  Biotechnol Prog       Date:  2004 Sep-Oct

4.  Watermarking sexually reproducing diploid organisms.

Authors:  Dominik Heider; Daniel Kessler; Angelika Barnekow
Journal:  Bioinformatics       Date:  2008-07-03       Impact factor: 6.937

5.  An improved Huffman coding method for archiving text, images, and music characters in DNA.

Authors:  Menachem Ailenberg; Ori Rotstein
Journal:  Biotechniques       Date:  2009-09       Impact factor: 1.993

6.  Next-generation digital information storage in DNA.

Authors:  George M Church; Yuan Gao; Sriram Kosuri
Journal:  Science       Date:  2012-08-16       Impact factor: 47.728

7.  Prediction of membrane proteins using split amino acid and ensemble classification.

Authors:  Maqsood Hayat; Asifullah Khan; Mohammed Yeasin
Journal:  Amino Acids       Date:  2011-08-18       Impact factor: 3.520

Review 8.  DNA repair Ku proteins in gastric cancer cells and pancreatic acinar cells.

Authors:  H Kim
Journal:  Amino Acids       Date:  2006-10-12       Impact factor: 3.520

9.  Embedding permanent watermarks in synthetic genes.

Authors:  Michael Liss; Daniela Daubert; Kathrin Brunner; Kristina Kliche; Ulrich Hammes; Andreas Leiherer; Ralf Wagner
Journal:  PLoS One       Date:  2012-08-08       Impact factor: 3.240

10.  DNA watermarks: a proof of concept.

Authors:  Dominik Heider; Angelika Barnekow
Journal:  BMC Mol Biol       Date:  2008-04-21       Impact factor: 2.946

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