Literature DB >> 29744271

DNA as a digital information storage device: hope or hype?

Darshan Panda1, Kutubuddin Ali Molla1, Mirza Jainul Baig1, Alaka Swain1, Deeptirekha Behera1, Manaswini Dash1.   

Abstract

The total digital information today amounts to 3.52 × 1022 bits globally, and at its consistent exponential rate of growth is expected to reach 3 × 1024 bits by 2040. Data storage density of silicon chips is limited, and magnetic tapes used to maintain large-scale permanent archives begin to deteriorate within 20 years. Since silicon has limited data storage ability and serious limitations, such as human health hazards and environmental pollution, researchers across the world are intently searching for an appropriate alternative. Deoxyribonucleic acid (DNA) is an appealing option for such a purpose due to its endurance, a higher degree of compaction, and similarity to the sequential code of 0's and 1's as found in a computer. This emerging field of DNA as means of data storage has the potential to transform science fiction into reality, wherein a device that can fit in our palms can accommodate the information of the entire world, as latest research has revealed that just four grams of DNA could store the annual global digital information. DNA has all the properties to supersede the conventional hard disk, as it is capable of retaining ten times more data, has a thousandfold storage density, and consumes 108 times less power to store a similar amount of data. Although DNA has an enormous potential as a data storage device of the future, multiple bottlenecks such as exorbitant costs, excruciatingly slow writing and reading mechanisms, and vulnerability to mutations or errors need to be resolved. In this review, we have critically analyzed the emergence of DNA as a molecular storage device for the future, its ability to address the future digital data crunch, potential challenges in achieving this objective, various current industrial initiatives, and major breakthroughs.

Entities:  

Keywords:  DNA hard drive; DNA steganography; DNA storage; Data crunch; Data longevity; Digital data; Silicone pollution

Year:  2018        PMID: 29744271      PMCID: PMC5935598          DOI: 10.1007/s13205-018-1246-7

Source DB:  PubMed          Journal:  3 Biotech        ISSN: 2190-5738            Impact factor:   2.406


  31 in total

1.  Potential for enlarging DNA memory: the validity of experimental operations of scaled-up nested primer molecular memory.

Authors:  Satoshi Kashiwamura; Masahito Yamamoto; Atsushi Kameda; Toshikazu Shiba; Azuma Ohuchi
Journal:  Biosystems       Date:  2004-12-08       Impact factor: 1.973

2.  Length-based encoding of binary data in DNA.

Authors:  Nathaniel G Portney; Yonghui Wu; Lauren K Quezada; Stefano Lonardi; Mihrimah Ozkan
Journal:  Langmuir       Date:  2008-01-30       Impact factor: 3.882

3.  Robust chemical preservation of digital information on DNA in silica with error-correcting codes.

Authors:  Robert N Grass; Reinhard Heckel; Michela Puddu; Daniela Paunescu; Wendelin J Stark
Journal:  Angew Chem Int Ed Engl       Date:  2015-02-04       Impact factor: 15.336

4.  DNA rendering of polyhedral meshes at the nanoscale.

Authors:  Erik Benson; Abdulmelik Mohammed; Johan Gardell; Sergej Masich; Eugen Czeizler; Pekka Orponen; Björn Högberg
Journal:  Nature       Date:  2015-07-23       Impact factor: 49.962

5.  The half-life of DNA in bone: measuring decay kinetics in 158 dated fossils.

Authors:  Morten E Allentoft; Matthew Collins; David Harker; James Haile; Charlotte L Oskam; Marie L Hale; Paula F Campos; Jose A Samaniego; M Thomas P Gilbert; Eske Willerslev; Guojie Zhang; R Paul Scofield; Richard N Holdaway; Michael Bunce
Journal:  Proc Biol Sci       Date:  2012-10-10       Impact factor: 5.349

6.  Next-generation digital information storage in DNA.

Authors:  George M Church; Yuan Gao; Sriram Kosuri
Journal:  Science       Date:  2012-08-16       Impact factor: 47.728

7.  Creation of a bacterial cell controlled by a chemically synthesized genome.

Authors:  Daniel G Gibson; John I Glass; Carole Lartigue; Vladimir N Noskov; Ray-Yuan Chuang; Mikkel A Algire; Gwynedd A Benders; Michael G Montague; Li Ma; Monzia M Moodie; Chuck Merryman; Sanjay Vashee; Radha Krishnakumar; Nacyra Assad-Garcia; Cynthia Andrews-Pfannkoch; Evgeniya A Denisova; Lei Young; Zhi-Qing Qi; Thomas H Segall-Shapiro; Christopher H Calvey; Prashanth P Parmar; Clyde A Hutchison; Hamilton O Smith; J Craig Venter
Journal:  Science       Date:  2010-05-20       Impact factor: 47.728

8.  DNA sequences from Miocene fossils: an ndhF sequence of Magnolia latahensis (Magnoliaceae) and an rbcL sequence of Persea pseudocarolinensis (Lauraceae).

Authors:  Sangtae Kim; Douglas E Soltis; Pamela S Soltis; Youngbae Suh
Journal:  Am J Bot       Date:  2004-04       Impact factor: 3.844

9.  A Rewritable, Random-Access DNA-Based Storage System.

Authors:  S M Hossein Tabatabaei Yazdi; Yongbo Yuan; Jian Ma; Huimin Zhao; Olgica Milenkovic
Journal:  Sci Rep       Date:  2015-09-18       Impact factor: 4.379

10.  CRISPR-Cas encoding of a digital movie into the genomes of a population of living bacteria.

Authors:  Seth L Shipman; Jeff Nivala; Jeffrey D Macklis; George M Church
Journal:  Nature       Date:  2017-07-12       Impact factor: 49.962

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  5 in total

1.  A high storage density strategy for digital information based on synthetic DNA.

Authors:  Shufang Zhang; Beibei Huang; Xiangming Song; Tao Zhang; Hanjie Wang; Yuhong Liu
Journal:  3 Biotech       Date:  2019-08-24       Impact factor: 2.406

2.  A Hierarchical Error Correction Strategy for Text DNA Storage.

Authors:  Xiangzhen Zan; Xiangyu Yao; Peng Xu; Zhihua Chen; Lian Xie; Shudong Li; Wenbin Liu
Journal:  Interdiscip Sci       Date:  2021-08-31       Impact factor: 2.233

Review 3.  Functional Nucleic Acid Nanomaterials: Development, Properties, and Applications.

Authors:  Wentao Xu; Wanchong He; Zaihui Du; Liye Zhu; Kunlun Huang; Yi Lu; Yunbo Luo
Journal:  Angew Chem Int Ed Engl       Date:  2020-08-25       Impact factor: 16.823

4.  Storage of Information Using Small Organic Molecules.

Authors:  Brian J Cafferty; Alexei S Ten; Michael J Fink; Scott Morey; Daniel J Preston; Milan Mrksich; George M Whitesides
Journal:  ACS Cent Sci       Date:  2019-05-01       Impact factor: 14.553

5.  From Sequence-Defined Macromolecules to Macromolecular Pin Codes.

Authors:  Joshua O Holloway; Filip Van Lijsebetten; Nezha Badi; Hannes A Houck; Filip E Du Prez
Journal:  Adv Sci (Weinh)       Date:  2020-03-03       Impact factor: 16.806

  5 in total

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