Literature DB >> 19847914

Mechanism of formation of the C-terminal beta-hairpin of the B3 domain of the immunoglobulin binding protein G from Streptococcus. III. Dynamics of long-range hydrophobic interactions.

Agnieszka Lewandowska1, Stanisław Ołdziej, Adam Liwo, Harold A Scheraga.   

Abstract

A 20-residue peptide, IG(42-61), derived from the C-terminal beta-hairpin of the B3 domain of the immunoglobulin binding protein G from Streptoccocus was studied using circular dichroism, nuclear magnetic resonance (NMR) spectroscopy at various temperatures and by differential scanning calorimetry (DSC). Unlike other related peptides studied so far, this peptide displays two heat capacity peaks in DSC measurements (at a scanning rate of 1.5 deg/min at a peptide concentration of 0.07 mM), which suggests a three-state folding/unfolding process. The results from DSC and NMR measurements suggest the formation of a dynamic network of hydrophobic interactions stabilizing the structure, which resembles a beta-hairpin shape over a wide range of temperatures (283-313 K). Our results show that IG (42-61) possesses a well-organized three-dimensional structure stabilized by long-range hydrophobic interactions (Tyr50 ... Phe57 and Trp48 ... Val59) at T = 283 K and (Trp48 ... Val59) at 305 and 313 K. The mechanism of beta-hairpin folding and unfolding, as well as the influence of peptide length on its conformational properties, are also discussed.

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Year:  2010        PMID: 19847914      PMCID: PMC3074100          DOI: 10.1002/prot.22605

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  51 in total

1.  Enhanced hairpin stability through loop design: the case of the protein G B1 domain hairpin.

Authors:  R Matthew Fesinmeyer; F Michael Hudson; Niels H Andersen
Journal:  J Am Chem Soc       Date:  2004-06-16       Impact factor: 15.419

2.  Calorimetric evidence for a two-state unfolding of the beta-hairpin peptide trpzip4.

Authors:  Werner W Streicher; George I Makhatadze
Journal:  J Am Chem Soc       Date:  2006-01-11       Impact factor: 15.419

3.  Improved efficiency of protein structure calculations from NMR data using the program DIANA with redundant dihedral angle constraints.

Authors:  P Güntert; K Wüthrich
Journal:  J Biomol NMR       Date:  1991-11       Impact factor: 2.835

Review 4.  Intermediates in the folding reactions of small proteins.

Authors:  P S Kim; R L Baldwin
Journal:  Annu Rev Biochem       Date:  1990       Impact factor: 23.643

5.  A short linear peptide derived from the N-terminal sequence of ubiquitin folds into a water-stable non-native beta-hairpin.

Authors:  M S Searle; D H Williams; L C Packman
Journal:  Nat Struct Biol       Date:  1995-11

6.  Dissecting the structure of a partially folded protein. Circular dichroism and nuclear magnetic resonance studies of peptides from ubiquitin.

Authors:  J P Cox; P A Evans; L C Packman; D H Williams; D N Woolfson
Journal:  J Mol Biol       Date:  1993-11-20       Impact factor: 5.469

7.  Influence of water on protein structure. An analysis of the preferences of amino acid residues for the inside or outside and for specific conformations in a protein molecule.

Authors:  D H Wertz; H A Scheraga
Journal:  Macromolecules       Date:  1978 Jan-Feb       Impact factor: 5.985

8.  Mechanism of formation of the C-terminal beta-hairpin of the B3 domain of the immunoglobulin binding protein G from Streptococcus. I. Importance of hydrophobic interactions in stabilization of beta-hairpin structure.

Authors:  Agnieszka Skwierawska; Joanna Makowska; Stanisław Ołdziej; Adam Liwo; Harold A Scheraga
Journal:  Proteins       Date:  2009-06

9.  Conformational studies of the alpha-helical 28-43 fragment of the B3 domain of the immunoglobulin binding protein G from Streptococcus.

Authors:  Agnieszka Skwierawska; Sylwia Rodziewicz-Motowidło; Stanisław Ołdziej; Adam Liwo; Harold A Scheraga
Journal:  Biopolymers       Date:  2008-11       Impact factor: 2.505

10.  'Random coil' 1H chemical shifts obtained as a function of temperature and trifluoroethanol concentration for the peptide series GGXGG.

Authors:  G Merutka; H J Dyson; P E Wright
Journal:  J Biomol NMR       Date:  1995-01       Impact factor: 2.835

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  5 in total

1.  Thermodynamics of protein folding using a modified Wako-Saitô-Muñoz-Eaton model.

Authors:  Min-Yeh Tsai; Jian-Min Yuan; Yoshiaki Teranishi; Sheng Hsien Lin
Journal:  J Biol Phys       Date:  2012-06-21       Impact factor: 1.365

2.  Infrared study of the stability and folding kinetics of a series of β-hairpin peptides with a common NPDG turn.

Authors:  Yao Xu; Deguo Du; Rolando Oyola
Journal:  J Phys Chem B       Date:  2011-12-02       Impact factor: 2.991

Review 3.  beta-hairpin-forming peptides; models of early stages of protein folding.

Authors:  Agnieszka Lewandowska; Stanisław Ołdziej; Adam Liwo; Harold A Scheraga
Journal:  Biophys Chem       Date:  2010-05-06       Impact factor: 2.352

4.  Improvement of the treatment of loop structures in the UNRES force field by inclusion of coupling between backbone- and side-chain-local conformational states.

Authors:  Paweł Krupa; Adam K Sieradzan; S Rackovsky; Maciej Baranowski; Stanisław Ołldziej; Harold A Scheraga; Adam Liwo; Cezary Czaplewski
Journal:  J Chem Theory Comput       Date:  2013-10-08       Impact factor: 6.006

5.  Long range Trp-Trp interaction initiates the folding pathway of a pro-angiogenic β-hairpin peptide.

Authors:  Donatella Diana; Lucia De Rosa; Maddalena Palmieri; Anna Russomanno; Luigi Russo; Carmelo La Rosa; Danilo Milardi; Giorgio Colombo; Luca D D'Andrea; Roberto Fattorusso
Journal:  Sci Rep       Date:  2015-11-25       Impact factor: 4.379

  5 in total

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