Literature DB >> 19844993

Two-dimensional crystals of carboxysome shell proteins recapitulate the hexagonal packing of three-dimensional crystals.

Kelly A Dryden1, Christopher S Crowley, Shiho Tanaka, Todd O Yeates, Mark Yeager.   

Abstract

Bacterial microcompartments (BMCs) are large intracellular bodies that serve as simple organelles in many bacteria. They are proteinaceous structures composed of key enzymes encapsulated by a polyhedral protein shell. In previous studies, the organization of these large shells has been inferred from the conserved packing of the component shell proteins in two-dimensional (2D) layers within the context of three-dimensional (3D) crystals. Here, we show that well-ordered, 2D crystals of carboxysome shell proteins assemble spontaneously when His-tagged proteins bind to a monolayer of nickelated lipid molecules at an air-water interface. The molecular packing within the 2D crystals recapitulates the layered hexagonal sheets observed in 3D crystals. The results reinforce current models for the molecular design of BMC shells.

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Year:  2009        PMID: 19844993      PMCID: PMC2821281          DOI: 10.1002/pro.272

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  32 in total

Review 1.  Microcompartments in prokaryotes: carboxysomes and related polyhedra.

Authors:  G C Cannon; C E Bradburne; H C Aldrich; S H Baker; S Heinhorst; J M Shively
Journal:  Appl Environ Microbiol       Date:  2001-12       Impact factor: 4.792

2.  Three-dimensional structure of the M-MuLV CA protein on a lipid monolayer: a general model for retroviral capsid assembly.

Authors:  Barbie K Ganser; Anchi Cheng; Wesley I Sundquist; Mark Yeager
Journal:  EMBO J       Date:  2003-06-16       Impact factor: 11.598

3.  Native hepatitis B virions and capsids visualized by electron cryomicroscopy.

Authors:  Kelly A Dryden; Stefan F Wieland; Christina Whitten-Bauer; John L Gerin; Francis V Chisari; Mark Yeager
Journal:  Mol Cell       Date:  2006-06-23       Impact factor: 17.970

4.  Insights from multiple structures of the shell proteins from the beta-carboxysome.

Authors:  Shiho Tanaka; Michael R Sawaya; Martin Phillips; Todd O Yeates
Journal:  Protein Sci       Date:  2009-01       Impact factor: 6.725

5.  Minimal functions and physiological conditions required for growth of salmonella enterica on ethanolamine in the absence of the metabolosome.

Authors:  Shaun R Brinsmade; Tenzin Paldon; Jorge C Escalante-Semerena
Journal:  J Bacteriol       Date:  2005-12       Impact factor: 3.490

6.  PduA is a shell protein of polyhedral organelles involved in coenzyme B(12)-dependent degradation of 1,2-propanediol in Salmonella enterica serovar typhimurium LT2.

Authors:  Gregory D Havemann; Edith M Sampson; Thomas A Bobik
Journal:  J Bacteriol       Date:  2002-03       Impact factor: 3.490

7.  The propanediol utilization (pdu) operon of Salmonella enterica serovar Typhimurium LT2 includes genes necessary for formation of polyhedral organelles involved in coenzyme B(12)-dependent 1, 2-propanediol degradation.

Authors:  T A Bobik; G D Havemann; R J Busch; D S Williams; H C Aldrich
Journal:  J Bacteriol       Date:  1999-10       Impact factor: 3.490

Review 8.  CO2 concentrating mechanisms in cyanobacteria: molecular components, their diversity and evolution.

Authors:  Murray R Badger; G Dean Price
Journal:  J Exp Bot       Date:  2003-02       Impact factor: 6.992

9.  The structure of isolated Synechococcus strain WH8102 carboxysomes as revealed by electron cryotomography.

Authors:  Cristina V Iancu; H Jane Ding; Dylan M Morris; D Prabha Dias; Arlene D Gonzales; Anthony Martino; Grant J Jensen
Journal:  J Mol Biol       Date:  2007-06-29       Impact factor: 5.469

10.  Structural analysis of CsoS1A and the protein shell of the Halothiobacillus neapolitanus carboxysome.

Authors:  Yingssu Tsai; Michael R Sawaya; Gordon C Cannon; Fei Cai; Eric B Williams; Sabine Heinhorst; Cheryl A Kerfeld; Todd O Yeates
Journal:  PLoS Biol       Date:  2007-06       Impact factor: 8.029

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  26 in total

1.  A Complete Structural Inventory of the Mycobacterial Microcompartment Shell Proteins Constrains Models of Global Architecture and Transport.

Authors:  Evan Mallette; Matthew S Kimber
Journal:  J Biol Chem       Date:  2016-12-06       Impact factor: 5.157

Review 2.  Electron cryomicroscopy of membrane proteins: specimen preparation for two-dimensional crystals and single particles.

Authors:  Ingeborg Schmidt-Krey; John L Rubinstein
Journal:  Micron       Date:  2010-07-16       Impact factor: 2.251

3.  Molecular simulations unravel the molecular principles that mediate selective permeability of carboxysome shell protein.

Authors:  Matthew Faulkner; István Szabó; Samantha L Weetman; Francois Sicard; Roland G Huber; Peter J Bond; Edina Rosta; Lu-Ning Liu
Journal:  Sci Rep       Date:  2020-10-15       Impact factor: 4.379

Review 4.  Diverse bacterial microcompartment organelles.

Authors:  Chiranjit Chowdhury; Sharmistha Sinha; Sunny Chun; Todd O Yeates; Thomas A Bobik
Journal:  Microbiol Mol Biol Rev       Date:  2014-09       Impact factor: 11.056

5.  A challenging interpretation of a hexagonally layered protein structure.

Authors:  Michael C Thompson; Todd O Yeates
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-12-24

6.  Visualizing Individual RuBisCO and Its Assembly into Carboxysomes in Marine Cyanobacteria by Cryo-Electron Tomography.

Authors:  Wei Dai; Muyuan Chen; Christopher Myers; Steven J Ludtke; B Montgomery Pettitt; Jonathan A King; Michael F Schmid; Wah Chiu
Journal:  J Mol Biol       Date:  2018-08-20       Impact factor: 5.469

7.  Molecular Dynamics Simulations of Selective Metabolite Transport across the Propanediol Bacterial Microcompartment Shell.

Authors:  Jiyong Park; Sunny Chun; Thomas A Bobik; Kendall N Houk; Todd O Yeates
Journal:  J Phys Chem B       Date:  2017-08-22       Impact factor: 2.991

Review 8.  Bacterial microcompartments: widespread prokaryotic organelles for isolation and optimization of metabolic pathways.

Authors:  Thomas A Bobik; Brent P Lehman; Todd O Yeates
Journal:  Mol Microbiol       Date:  2015-08-03       Impact factor: 3.501

Review 9.  Engineering spatiotemporal organization and dynamics in synthetic cells.

Authors:  Alessandro Groaz; Hossein Moghimianavval; Franco Tavella; Tobias W Giessen; Anthony G Vecchiarelli; Qiong Yang; Allen P Liu
Journal:  Wiley Interdiscip Rev Nanomed Nanobiotechnol       Date:  2020-11-21

10.  Alanine scanning mutagenesis identifies an asparagine-arginine-lysine triad essential to assembly of the shell of the Pdu microcompartment.

Authors:  Sharmistha Sinha; Shouqiang Cheng; Yea Won Sung; Dan E McNamara; Michael R Sawaya; Todd O Yeates; Thomas A Bobik
Journal:  J Mol Biol       Date:  2014-04-18       Impact factor: 5.469

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