Literature DB >> 19844610

The Intersection of Theory and Application in Elucidating Pattern Formation in Developmental Biology.

Hans G Othmer1, Kevin Painter, David Umulis, Chuan Xue.   

Abstract

We discuss theoretical and experimental approaches to three distinct developmental systems that illustrate how theory can influence experimental work and vice-versa. The chosen systems - Drosophila melanogaster, bacterial pattern formation, and pigmentation patterns - illustrate the fundamental physical processes of signaling, growth and cell division, and cell movement involved in pattern formation and development. These systems exemplify the current state of theoretical and experimental understanding of how these processes produce the observed patterns, and illustrate how theoretical and experimental approaches can interact to lead to a better understanding of development. As John Bonner said long ago'We have arrived at the stage where models are useful to suggest experiments, and the facts of the experiments in turn lead to new and improved models that suggest new experiments. By this rocking back and forth between the reality of experimental facts and the dream world of hypotheses, we can move slowly toward a satisfactory solution of the major problems of developmental biology.'

Entities:  

Year:  2009        PMID: 19844610      PMCID: PMC2763616          DOI: 10.1051/mmnp/20094401

Source DB:  PubMed          Journal:  Math Model Nat Phenom        ISSN: 0973-5348            Impact factor:   4.157


  173 in total

Review 1.  Biofilms: implications in bioremediation.

Authors:  Rajbir Singh; Debarati Paul; Rakesh K Jain
Journal:  Trends Microbiol       Date:  2006-07-18       Impact factor: 17.079

2.  Development of regular cellular spacing in the retina: theoretical models.

Authors:  Stephen J Eglen
Journal:  Math Med Biol       Date:  2006-03-01       Impact factor: 1.854

3.  Stripe selection: an intrinsic property of some pattern-forming models with nonlinear dynamics.

Authors:  M J Lyons; L G Harrison
Journal:  Dev Dyn       Date:  1992-11       Impact factor: 3.780

4.  Stochastic generation of regular distributions.

Authors:  L Glass
Journal:  Science       Date:  1973-06-08       Impact factor: 47.728

5.  Dynamics of formation of symmetrical patterns by chemotactic bacteria.

Authors:  E O Budrene; H C Berg
Journal:  Nature       Date:  1995-07-06       Impact factor: 49.962

6.  The bicoid protein determines position in the Drosophila embryo in a concentration-dependent manner.

Authors:  W Driever; C Nüsslein-Volhard
Journal:  Cell       Date:  1988-07-01       Impact factor: 41.582

7.  Model for chemotaxis.

Authors:  E F Keller; L A Segel
Journal:  J Theor Biol       Date:  1971-02       Impact factor: 2.691

8.  Temporal and cellular requirements for Fms signaling during zebrafish adult pigment pattern development.

Authors:  David M Parichy; Jessica M Turner
Journal:  Development       Date:  2003-03       Impact factor: 6.868

9.  A reaction-diffusion wave on the skin of the marine angelfish Pomacanthus.

Authors:  S Kondo; R Asal
Journal:  Nature       Date:  1995-08-31       Impact factor: 49.962

10.  Design and diversity in bacterial chemotaxis: a comparative study in Escherichia coli and Bacillus subtilis.

Authors:  Christopher V Rao; John R Kirby; Adam P Arkin
Journal:  PLoS Biol       Date:  2004-02-17       Impact factor: 8.029

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  16 in total

1.  The effect of the signalling scheme on the robustness of pattern formation in development.

Authors:  Hye-Won Kang; Likun Zheng; Hans G Othmer
Journal:  Interface Focus       Date:  2012-03-21       Impact factor: 3.906

2.  Towards an integrated experimental-theoretical approach for assessing the mechanistic basis of hair and feather morphogenesis.

Authors:  K J Painter; G S Hunt; K L Wells; J A Johansson; D J Headon
Journal:  Interface Focus       Date:  2012-02-15       Impact factor: 3.906

Review 3.  Mechanisms of scaling in pattern formation.

Authors:  David M Umulis; Hans G Othmer
Journal:  Development       Date:  2013-12       Impact factor: 6.868

Review 4.  Regenerative orthopaedics: in vitro, in vivo...in silico.

Authors:  Liesbet Geris
Journal:  Int Orthop       Date:  2014-07-02       Impact factor: 3.075

5.  Predicting the spatiotemporal dynamics of hair follicle patterns in the developing mouse.

Authors:  Chi Wa Cheng; Ben Niu; Mya Warren; Larysa Halyna Pevny; Robin Lovell-Badge; Terence Hwa; Kathryn S E Cheah
Journal:  Proc Natl Acad Sci U S A       Date:  2014-02-03       Impact factor: 11.205

6.  Moment-flux models for bacterial chemotaxis in large signal gradients.

Authors:  Chuan Xue; Xige Yang
Journal:  J Math Biol       Date:  2016-02-27       Impact factor: 2.259

7.  Spatial pattern formation in reaction-diffusion models: a computational approach.

Authors:  Wenrui Hao; Chuan Xue
Journal:  J Math Biol       Date:  2020-01-06       Impact factor: 2.259

8.  Improving Parameter Inference from FRAP Data: an Analysis Motivated by Pattern Formation in the Drosophila Wing Disc.

Authors:  Lin Lin; Hans G Othmer
Journal:  Bull Math Biol       Date:  2017-01-18       Impact factor: 1.758

9.  Macroscopic equations for bacterial chemotaxis: integration of detailed biochemistry of cell signaling.

Authors:  Chuan Xue
Journal:  J Math Biol       Date:  2013-12-24       Impact factor: 2.259

10.  Excitation and adaptation in bacteria-a model signal transduction system that controls taxis and spatial pattern formation.

Authors:  Hans G Othmer; Xiangrong Xin; Chuan Xue
Journal:  Int J Mol Sci       Date:  2013-04-26       Impact factor: 5.923

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