Literature DB >> 19834223

Structuring feature space: a non-parametric method for volumetric transfer function generation.

Ross Maciejewski1, Insoo Woo, Wei Chen, David S Ebert.   

Abstract

The use of multi-dimensional transfer functions for direct volume rendering has been shown to be an effective means of extracting materials and their boundaries for both scalar and multivariate data. The most common multi-dimensional transfer function consists of a two-dimensional (2D) histogram with axes representing a subset of the feature space (e.g., value vs. value gradient magnitude), with each entry in the 2D histogram being the number of voxels at a given feature space pair. Users then assign color and opacity to the voxel distributions within the given feature space through the use of interactive widgets (e.g., box, circular, triangular selection). Unfortunately, such tools lead users through a trial-and-error approach as they assess which data values within the feature space map to a given area of interest within the volumetric space. In this work, we propose the addition of non-parametric clustering within the transfer function feature space in order to extract patterns and guide transfer function generation. We apply a non-parametric kernel density estimation to group voxels of similar features within the 2D histogram. These groups are then binned and colored based on their estimated density, and the user may interactively grow and shrink the binned regions to explore feature boundaries and extract regions of interest. We also extend this scheme to temporal volumetric data in which time steps of 2D histograms are composited into a histogram volume. A three-dimensional (3D) density estimation is then applied, and users can explore regions within the feature space across time without adjusting the transfer function at each time step. Our work enables users to effectively explore the structures found within a feature space of the volume and provide a context in which the user can understand how these structures relate to their volumetric data. We provide tools for enhanced exploration and manipulation of the transfer function, and we show that the initial transfer function generation serves as a reasonable base for volumetric rendering, reducing the trial-and-error overhead typically found in transfer function design.

Mesh:

Year:  2009        PMID: 19834223     DOI: 10.1109/TVCG.2009.185

Source DB:  PubMed          Journal:  IEEE Trans Vis Comput Graph        ISSN: 1077-2626            Impact factor:   4.579


  7 in total

1.  2D Histogram based volume visualization: combining intensity and size of anatomical structures.

Authors:  S Wesarg; M Kirschner; M F Khan
Journal:  Int J Comput Assist Radiol Surg       Date:  2010-05-30       Impact factor: 2.924

2.  Multi-dimensional Reduction and Transfer Function Design using Parallel Coordinates.

Authors:  X Zhao; A Kaufman
Journal:  Vol Graph       Date:  2010

3.  Modified Dendrogram of High-dimensional Feature Space for Transfer Function Design.

Authors:  Lei Wang; Xin Zhao; Arie Kaufman
Journal:  Visualization (Los Alamitos Calif)       Date:  2012-01

4.  FeatureLego: Volume Exploration Using Exhaustive Clustering of Super-Voxels.

Authors:  Shreeraj Jadhav; Saad Nadeem; Arie Kaufman
Journal:  IEEE Trans Vis Comput Graph       Date:  2018-07-17       Impact factor: 4.579

5.  Dimensionality Reduction on Multi-Dimensional Transfer Functions for Multi-Channel Volume Data Sets.

Authors:  Han Suk Kim; Jürgen P Schulze; Angela C Cone; Gina E Sosinsky; Maryann E Martone
Journal:  Inf Vis       Date:  2010-09-21       Impact factor: 0.956

6.  Visualizing simulated electrical fields from electroencephalography and transcranial electric brain stimulation: a comparative evaluation.

Authors:  Sebastian Eichelbaum; Moritz Dannhauer; Mario Hlawitschka; Dana Brooks; Thomas R Knösche; Gerik Scheuermann
Journal:  Neuroimage       Date:  2014-05-10       Impact factor: 6.556

7.  Interactive visual exploration of overlapping similar structures for three-dimensional microscope images.

Authors:  Megumi Nakao; Shintaro Takemoto; Tadao Sugiura; Kazuaki Sawada; Ryosuke Kawakami; Tomomi Nemoto; Tetsuya Matsuda
Journal:  BMC Bioinformatics       Date:  2014-12-19       Impact factor: 3.169

  7 in total

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