Literature DB >> 21841914

Dimensionality Reduction on Multi-Dimensional Transfer Functions for Multi-Channel Volume Data Sets.

Han Suk Kim1, Jürgen P Schulze, Angela C Cone, Gina E Sosinsky, Maryann E Martone.   

Abstract

The design of transfer functions for volume rendering is a non-trivial task. This is particularly true for multi-channel data sets, where multiple data values exist for each voxel, which requires multi-dimensional transfer functions. In this paper, we propose a new method for multi-dimensional transfer function design. Our new method provides a framework to combine multiple computational approaches and pushes the boundary of gradient-based multi-dimensional transfer functions to multiple channels, while keeping the dimensionality of transfer functions at a manageable level, i.e., a maximum of three dimensions, which can be displayed visually in a straightforward way. Our approach utilizes channel intensity, gradient, curvature and texture properties of each voxel. Applying recently developed nonlinear dimensionality reduction algorithms reduces the high-dimensional data of the domain. In this paper, we use Isomap and Locally Linear Embedding as well as a traditional algorithm, Principle Component Analysis. Our results show that these dimensionality reduction algorithms significantly improve the transfer function design process without compromising visualization accuracy. We demonstrate the effectiveness of our new dimensionality reduction algorithms with two volumetric confocal microscopy data sets.

Entities:  

Year:  2010        PMID: 21841914      PMCID: PMC3153355          DOI: 10.1057/ivs.2010.6

Source DB:  PubMed          Journal:  Inf Vis        ISSN: 1473-8716            Impact factor:   0.956


  8 in total

1.  Nonlinear dimensionality reduction by locally linear embedding.

Authors:  S T Roweis; L K Saul
Journal:  Science       Date:  2000-12-22       Impact factor: 47.728

2.  A global geometric framework for nonlinear dimensionality reduction.

Authors:  J B Tenenbaum; V de Silva; J C Langford
Journal:  Science       Date:  2000-12-22       Impact factor: 47.728

3.  A cell-centered database for electron tomographic data.

Authors:  Maryann E Martone; Amarnath Gupta; Mona Wong; Xufei Qian; Gina Sosinsky; Bertram Ludäscher; Mark H Ellisman
Journal:  J Struct Biol       Date:  2002 Apr-May       Impact factor: 2.867

4.  Hessian eigenmaps: locally linear embedding techniques for high-dimensional data.

Authors:  David L Donoho; Carrie Grimes
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-30       Impact factor: 11.205

5.  Size-based transfer functions: a new volume exploration technique.

Authors:  Carlos D Correa; Kwan-Liu Ma
Journal:  IEEE Trans Vis Comput Graph       Date:  2008 Nov-Dec       Impact factor: 4.579

6.  Texture-based transfer functions for direct volume rendering.

Authors:  Jesus J Caban; Penny Rheingans
Journal:  IEEE Trans Vis Comput Graph       Date:  2008 Nov-Dec       Impact factor: 4.579

7.  Structuring feature space: a non-parametric method for volumetric transfer function generation.

Authors:  Ross Maciejewski; Insoo Woo; Wei Chen; David S Ebert
Journal:  IEEE Trans Vis Comput Graph       Date:  2009 Nov-Dec       Impact factor: 4.579

8.  Multi-Channel Transfer Function with Dimensionality Reduction.

Authors:  Han Suk Kim; Jürgen P Schulze; Angela C Cone; Gina E Sosinsky; Maryann E Martone
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2010-01-18
  8 in total

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