Literature DB >> 19825670

Identification of lignin and polysaccharide modifications in Populus wood by chemometric analysis of 2D NMR spectra from dissolved cell walls.

Mattias Hedenström1, Susanne Wiklund-Lindström, Tommy Oman, Fachuang Lu, Lorenz Gerber, Paul Schatz, Björn Sundberg, John Ralph.   

Abstract

2D 13C-(1)H HSQC NMR spectroscopy of acetylated cell walls in solution gives a detailed fingerprint that can be used to assess the chemical composition of the complete wall without extensive degradation. We demonstrate how multivariate analysis of such spectra can be used to visualize cell wall changes between sample types as high-resolution 2D NMR loading spectra. Changes in composition and structure for both lignin and polysaccharides can subsequently be interpreted on a molecular level. The multivariate approach alleviates problems associated with peak picking of overlapping peaks, and it allows the deduction of the relative importance of each peak for sample discrimination. As a first proof of concept, we compare Populus tension wood to normal wood. All well established differences in cellulose, hemicellulose, and lignin compositions between these wood types were readily detected, confirming the reliability of the multivariate approach. In a second example, wood from transgenic Populus modified in their degree of pectin methylesterification was compared to that of wild-type trees. We show that differences in both lignin and polysaccharide composition that are difficult to detect with traditional spectral analysis and that could not be a priori predicted were revealed by the multivariate approach. 2D NMR of dissolved cell wall samples combined with multivariate analysis constitutes a novel approach in cell wall analysis and provides a new tool that will benefit cell wall research.

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Year:  2009        PMID: 19825670     DOI: 10.1093/mp/ssp047

Source DB:  PubMed          Journal:  Mol Plant        ISSN: 1674-2052            Impact factor:   13.164


  19 in total

1.  Lignin biosynthesis and structure.

Authors:  Ruben Vanholme; Brecht Demedts; Kris Morreel; John Ralph; Wout Boerjan
Journal:  Plant Physiol       Date:  2010-05-14       Impact factor: 8.340

2.  Solution-state 2D NMR of ball-milled plant cell wall gels in DMSO-d(6)/pyridine-d(5).

Authors:  Hoon Kim; John Ralph
Journal:  Org Biomol Chem       Date:  2009-12-03       Impact factor: 3.876

3.  Ultra-structural organisation of cell wall polymers in normal and tension wood of aspen revealed by polarisation FTIR microspectroscopy.

Authors:  Anne-Mari Olsson; Ingela Bjurhager; Lorenz Gerber; Björn Sundberg; Lennart Salmén
Journal:  Planta       Date:  2011-02-22       Impact factor: 4.116

4.  Whole plant cell wall characterization using solution-state 2D NMR.

Authors:  Shawn D Mansfield; Hoon Kim; Fachuang Lu; John Ralph
Journal:  Nat Protoc       Date:  2012-08-02       Impact factor: 13.491

5.  2D NMR-spectroscopic screening reveals polyketides in ladybugs.

Authors:  Stephen T Deyrup; Laura E Eckman; Patrick H McCarthy; Scott R Smedley; Jerrold Meinwald; Frank C Schroeder
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-06       Impact factor: 11.205

6.  2D NMR-based metabolomics uncovers interactions between conserved biochemical pathways in the model organism Caenorhabditis elegans.

Authors:  Yevgeniy Izrayelit; Steven L Robinette; Neelanjan Bose; Stephan H von Reuss; Frank C Schroeder
Journal:  ACS Chem Biol       Date:  2012-11-26       Impact factor: 5.100

7.  Aspen Tension Wood Fibers Contain β-(1---> 4)-Galactans and Acidic Arabinogalactans Retained by Cellulose Microfibrils in Gelatinous Walls.

Authors:  Tatyana Gorshkova; Natalia Mokshina; Tatyana Chernova; Nadezhda Ibragimova; Vadim Salnikov; Polina Mikshina; Theodora Tryfona; Alicja Banasiak; Peter Immerzeel; Paul Dupree; Ewa J Mellerowicz
Journal:  Plant Physiol       Date:  2015-09-16       Impact factor: 8.340

8.  Ectopic lignification in the flax lignified bast fiber1 mutant stem is associated with tissue-specific modifications in gene expression and cell wall composition.

Authors:  Maxime Chantreau; Antoine Portelette; Rebecca Dauwe; Shingo Kiyoto; David Crônier; Kris Morreel; Sandrine Arribat; Godfrey Neutelings; Malika Chabi; Wout Boerjan; Arata Yoshinaga; François Mesnard; Sebastien Grec; Brigitte Chabbert; Simon Hawkins
Journal:  Plant Cell       Date:  2014-11-07       Impact factor: 11.277

9.  Plant cell wall profiling by fast maximum likelihood reconstruction (FMLR) and region-of-interest (ROI) segmentation of solution-state 2D 1H-13C NMR spectra.

Authors:  Roger A Chylla; Rebecca Van Acker; Hoon Kim; Ali Azapira; Purba Mukerjee; John L Markley; Véronique Storme; Wout Boerjan; John Ralph
Journal:  Biotechnol Biofuels       Date:  2013-04-26       Impact factor: 6.040

10.  ECOMICS: a web-based toolkit for investigating the biomolecular web in ecosystems using a trans-omics approach.

Authors:  Yoshiyuki Ogata; Eisuke Chikayama; Yusuke Morioka; R Craig Everroad; Amiu Shino; Akihiro Matsushima; Hideaki Haruna; Shigeharu Moriya; Tetsuro Toyoda; Jun Kikuchi
Journal:  PLoS One       Date:  2012-02-01       Impact factor: 3.240

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