Literature DB >> 19820971

Computational (DFT and TD DFT) study of the electron structure of the tautomers/conformers of uridine and deoxyuridine and the processes of intramolecular proton transfers.

Vassil B Delchev1.   

Abstract

Six uridine and six deoxyuridine isomers were studied at the B3LYP and TD B3LYP theoretical level and 6-31+G(d) basis function. The stability and the excited states of the isomers were studied in order to clarify some known experimental data. It was established that the rotation of the oxo uracil ring in uridine is energetically more likely to occur in the excited state than in the ground state, driven by the bright (1) pipi* state and the dark charge transfer (1)npi* state. Very high energy barriers (on the S(o)) were found for thermal intramolecular proton transfer processes.

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Year:  2009        PMID: 19820971     DOI: 10.1007/s00894-009-0593-z

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  11 in total

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2.  Solvent effect on the singlet excited-state lifetimes of nucleic acid bases: A computational study of 5-fluorouracil and uracil in acetonitrile and water.

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4.  Parameters for the Description of Transition States.

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Journal:  Science       Date:  1953-03-27       Impact factor: 47.728

5.  Proton affinity ladder for uridine and analogs: influence of the hydroxyl group on the sugar ring conformation.

Authors:  S Mezzache; S Alves; C Pepe; M Quelquejeu; F Fournier; J-M Valery; J-C Tabet
Journal:  J Mass Spectrom       Date:  2005-06       Impact factor: 1.982

6.  Uridine nucleotide selectivity of three phospholipase C-activating P2 receptors: identification of a UDP-selective, a UTP-selective, and an ATP- and UTP-specific receptor.

Authors:  R A Nicholas; W C Watt; E R Lazarowski; Q Li; K Harden
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7.  Ab initio calculations of nonlinear optical rotation by several small chiral molecules and by uridine stereoisomers.

Authors:  Weixing Qu; George C Tabisz
Journal:  J Chem Phys       Date:  2006-05-14       Impact factor: 3.488

8.  Mitochondrial dysfunction and antiretroviral nucleoside analog toxicities: what is the evidence?

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9.  Antidepressant-like effects of uridine and omega-3 fatty acids are potentiated by combined treatment in rats.

Authors:  William A Carlezon; Stephen D Mague; Aimee M Parow; Andrew L Stoll; Bruce M Cohen; Perry F Renshaw
Journal:  Biol Psychiatry       Date:  2005-02-15       Impact factor: 13.382

10.  Conformational structures and vibrational spectra of isolated pyrimidine nucleosides: Fourier transform infrared matrix isolation study of 2-deoxyuridine.

Authors:  A Yu Ivanov; S A Krasnokutski; G Sheina; Yu P Blagoi
Journal:  Spectrochim Acta A Mol Biomol Spectrosc       Date:  2003-07       Impact factor: 4.098

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  4 in total

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Journal:  J Mol Model       Date:  2015-09-19       Impact factor: 1.810

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Journal:  J Mol Model       Date:  2017-07-14       Impact factor: 1.810

3.  Two-Dimensional Infrared Study of Vibrational Coupling between Azide and Nitrile Reporters in a RNA Nucleoside.

Authors:  Andrew J Schmitz; David G Hogle; Xin Sonia Gai; Edward E Fenlon; Scott H Brewer; Matthew J Tucker
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4.  Thermal desorption effects on fragment ion production from multi-photon ionized uridine and selected analogues.

Authors:  J Bocková; A Rebelo; M Ryszka; R Pandey; D Mészáros; P Limão-Vieira; P Papp; N J Mason; D Townsend; K L Nixon; V Vizcaino; J-C Poully; S Eden
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  4 in total

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