Literature DB >> 17165786

Solvent effect on the singlet excited-state lifetimes of nucleic acid bases: A computational study of 5-fluorouracil and uracil in acetonitrile and water.

Fabrizio Santoro1, Vincenzo Barone, Thomas Gustavsson, Roberto Improta.   

Abstract

The first comprehensive quantum mechanical study of solvent effects on the behavior of the two lowest energy excited states of uracil derivatives is presented. The absorption and emission spectra of uracil and 5-fluorouracil in acetonitrile and aqueous solution have been computed at the time-dependent density-functional theory level, using the polarizable continuum model (PCM) to take into account bulk solvent effects. The computed spectra and the solvent shifts provided by our method are close to their experimental counterpart. The S0/S1 conical intersection, located in the presence of hydrogen-bonded solvent molecules by CASSCF (8/8) calculations, indicates that the mechanism of ground-state recovery, involving out-of-plane motion of the 5 substituent, does not depend on the nature of the solvent. Extensive explorations of the excited-state surfaces in the Franck-Condon (FC) region show that solvent can modulate the accessibility of an additional decay channel, involving a dark n/pi* excited state. This finding provides the first unifying explanation for the experimental trend of 5-fluorouracil excited-state lifetime in different solvents. The microscopic mechanisms underlying solvent effects on the excited-state behavior of nucleobases are discussed.

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Year:  2006        PMID: 17165786     DOI: 10.1021/ja0657861

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  8 in total

1.  Influence of base stacking on excited-state behavior of polyadenine in water, based on time-dependent density functional calculations.

Authors:  F Santoro; V Barone; R Improta
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-01       Impact factor: 11.205

2.  Computational (DFT and TD DFT) study of the electron structure of the tautomers/conformers of uridine and deoxyuridine and the processes of intramolecular proton transfers.

Authors:  Vassil B Delchev
Journal:  J Mol Model       Date:  2009-10-10       Impact factor: 1.810

3.  Assessment of the photosensitization properties of cationic porphyrins in interaction with DNA nucleotide pairs.

Authors:  Gloria I Cárdenas-Jirón; Luis Cortez
Journal:  J Mol Model       Date:  2013-04-14       Impact factor: 1.810

4.  Aloe vera induced biomimetic assemblage of nucleobase into nanosized particles.

Authors:  Arun Chauhan; Swaleha Zubair; Asif Sherwani; Mohammad Owais
Journal:  PLoS One       Date:  2012-03-05       Impact factor: 3.240

5.  Synthesis and spectroscopic characterization of two tetrasubstituted cationic porphyrin derivatives.

Authors:  Antonio E H Machado; Weverson R Gomes; Diesley M S Araújo; Hércules S Miglio; Leonardo T Ueno; Rodrigo De Paula; José A S Cavaleiro; Newton M Barbosa Neto
Journal:  Molecules       Date:  2011-07-08       Impact factor: 4.411

6.  Molecular Identification of the Transient Species Mediating the Deactivation Dynamics of Solvated Guanosine and Deazaguanosine.

Authors:  Javier Ortín-Fernández; Jesús González-Vázquez; Lara Martínez-Fernández; Inés Corral
Journal:  Molecules       Date:  2022-02-01       Impact factor: 4.411

7.  Density Functional Method Study on the Cooperativity of Intermolecular H-bonding and π-π+ Stacking Interactions in Thymine-[Cnmim]Br (n = 2, 4, 6, 8, 10) Microhydrates.

Authors:  Yanni Wang; Chaowu Dai; Wei Huang; Tingting Ni; Jianping Cao; Jiangmei Pang; Huining Wei; Chaojie Wang
Journal:  Molecules       Date:  2022-09-22       Impact factor: 4.927

8.  Dispersion corrected DFT approaches for anharmonic vibrational frequency calculations: nucleobases and their dimers.

Authors:  Teresa Fornaro; Malgorzata Biczysko; Susanna Monti; Vincenzo Barone
Journal:  Phys Chem Chem Phys       Date:  2014-02-17       Impact factor: 3.676

  8 in total

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