Literature DB >> 19815079

Learning partially directed functional networks from meta-analysis imaging data.

Jane Neumann1, Peter T Fox, Robert Turner, Gabriele Lohmann.   

Abstract

We propose a new exploratory method for the discovery of partially directed functional networks from fMRI meta-analysis data. The method performs structure learning of Bayesian networks in search of directed probabilistic dependencies between brain regions. Learning is based on the co-activation of brain regions observed across several independent imaging experiments. In a series of simulations, we first demonstrate the reliability of the method. We then present the application of our approach in an extensive meta-analysis including several thousand activation coordinates from more than 500 imaging studies. Results show that our method is able to automatically infer Bayesian networks that capture both directed and undirected probabilistic dependencies between a number of brain regions, including regions that are frequently observed in motor-related and cognitive control tasks.

Entities:  

Mesh:

Year:  2009        PMID: 19815079      PMCID: PMC2789920          DOI: 10.1016/j.neuroimage.2009.09.056

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  36 in total

1.  Meta-analysis of the functional neuroanatomy of single-word reading: method and validation.

Authors:  Peter E Turkeltaub; Guinevere F Eden; Karen M Jones; Thomas A Zeffiro
Journal:  Neuroimage       Date:  2002-07       Impact factor: 6.556

2.  Using replicator dynamics for analyzing fMRI data of the human brain.

Authors:  Gabriele Lohmann; Stefan Bohn
Journal:  IEEE Trans Med Imaging       Date:  2002-05       Impact factor: 10.048

3.  Functional heterogeneity within Broca's area during verbal working memory.

Authors:  J M Chein; K Fissell; S Jacobs; J A Fiez
Journal:  Physiol Behav       Date:  2002-12

4.  Neuroimaging studies of shifting attention: a meta-analysis.

Authors:  Tor D Wager; John Jonides; Susan Reading
Journal:  Neuroimage       Date:  2004-08       Impact factor: 6.556

5.  Finding related functional neuroimaging volumes.

Authors:  Finn Arup Nielsen; Lars Kai Hansen
Journal:  Artif Intell Med       Date:  2004-02       Impact factor: 5.326

6.  Internally generated and directly cued task sets: an investigation with fMRI.

Authors:  Birte U Forstmann; Marcel Brass; Iring Koch; D Yves von Cramon
Journal:  Neuropsychologia       Date:  2005       Impact factor: 3.139

7.  An effective structure learning method for constructing gene networks.

Authors:  Xue-Wen Chen; Gopalakrishna Anantha; Xinkun Wang
Journal:  Bioinformatics       Date:  2006-03-16       Impact factor: 6.937

8.  Model-based clustering of meta-analytic functional imaging data.

Authors:  Jane Neumann; D Yves von Cramon; Gabriele Lohmann
Journal:  Hum Brain Mapp       Date:  2008-02       Impact factor: 5.038

9.  Dynamic causal modelling.

Authors:  K J Friston; L Harrison; W Penny
Journal:  Neuroimage       Date:  2003-08       Impact factor: 6.556

10.  Coordinate-based activation likelihood estimation meta-analysis of neuroimaging data: a random-effects approach based on empirical estimates of spatial uncertainty.

Authors:  Simon B Eickhoff; Angela R Laird; Christian Grefkes; Ling E Wang; Karl Zilles; Peter T Fox
Journal:  Hum Brain Mapp       Date:  2009-09       Impact factor: 5.038

View more
  10 in total

Review 1.  Bayesian networks in neuroscience: a survey.

Authors:  Concha Bielza; Pedro Larrañaga
Journal:  Front Comput Neurosci       Date:  2014-10-16       Impact factor: 2.380

2.  Exploring functional relations between brain regions from fMRI meta-analysis data: comments on Ramsey, Spirtes, and Glymour.

Authors:  Jane Neumann; Robert Turner; Peter T Fox; Gabriele Lohmann
Journal:  Neuroimage       Date:  2010-11-12       Impact factor: 6.556

3.  Graphical models, potential outcomes and causal inference: comment on Ramsey, Spirtes and Glymour.

Authors:  Martin A Lindquist; Michael E Sobel
Journal:  Neuroimage       Date:  2010-10-21       Impact factor: 6.556

4.  Identifying functional co-activation patterns in neuroimaging studies via poisson graphical models.

Authors:  Wenqiong Xue; Jian Kang; F DuBois Bowman; Tor D Wager; Jian Guo
Journal:  Biometrics       Date:  2014-08-21       Impact factor: 2.571

Review 5.  Distributed processing; distributed functions?

Authors:  Peter T Fox; Karl J Friston
Journal:  Neuroimage       Date:  2012-01-05       Impact factor: 6.556

6.  A coordinate-based meta-analytic model of trauma processing in posttraumatic stress disorder.

Authors:  Amy E Ramage; Angela R Laird; Simon B Eickhoff; Ashley Acheson; Alan L Peterson; Douglas E Williamson; Michael J Telch; Peter T Fox
Journal:  Hum Brain Mapp       Date:  2012-08-30       Impact factor: 5.038

7.  Meta-analysis in human neuroimaging: computational modeling of large-scale databases.

Authors:  Peter T Fox; Jack L Lancaster; Angela R Laird; Simon B Eickhoff
Journal:  Annu Rev Neurosci       Date:  2014       Impact factor: 12.449

8.  Glutamatergic and resting-state functional connectivity correlates of severity in major depression - the role of pregenual anterior cingulate cortex and anterior insula.

Authors:  Dorothea I Horn; Chunshui Yu; Johann Steiner; Julia Buchmann; Joern Kaufmann; Annemarie Osoba; Ulf Eckert; Kathrin C Zierhut; Kolja Schiltz; Huiguang He; Bharat Biswal; Bernhard Bogerts; Martin Walter
Journal:  Front Syst Neurosci       Date:  2010-07-15

9.  Meta-analytic methods for neuroimaging data explained.

Authors:  Joaquim Radua; David Mataix-Cols
Journal:  Biol Mood Anxiety Disord       Date:  2012-03-08

10.  Amygdala and Dorsal Anterior Cingulate Connectivity during an Emotional Working Memory Task in Borderline Personality Disorder Patients with Interpersonal Trauma History.

Authors:  Annegret Krause-Utz; Bernet M Elzinga; Nicole Y L Oei; Christian Paret; Inga Niedtfeld; Philip Spinhoven; Martin Bohus; Christian Schmahl
Journal:  Front Hum Neurosci       Date:  2014-10-28       Impact factor: 3.169

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.