Literature DB >> 19807124

Chemical library screens targeting an HIV-1 accessory factor/host cell kinase complex identify novel antiretroviral compounds.

Lori Emert-Sedlak1, Toshiaki Kodama, Edwina C Lerner, Weixiang Dai, Caleb Foster, Billy W Day, John S Lazo, Thomas E Smithgall.   

Abstract

Nef is an HIV-1 accessory protein essential for AIDS progression and an attractive target for drug discovery. Lack of a catalytic function makes Nef difficult to assay in chemical library screens. We developed a high-throughput screening assay for inhibitors of Nef function by coupling it to one of its host cell binding partners, the Src-family kinase Hck. Hck activation is dependent upon Nef in this assay, providing a direct readout of Nef activity in vitro. Using this screen, a unique diphenylfuropyrimidine was identified as a strong inhibitor of Nef-dependent Hck activation. This compound also exhibited remarkable antiretroviral effects, blocking Nef-dependent HIV replication in cell culture. Structurally related analogs were synthesized and shown to exhibit similar Nef-dependent antiviral activity, identifying the diphenylfuropyrimidine substructure as a new lead for antiretroviral drug development. This study demonstrates that coupling noncatalytic HIV accessory factors with host cell target proteins addressable by high-throughput assays may afford new avenues for the discovery of anti-HIV agents.

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Year:  2009        PMID: 19807124      PMCID: PMC2861989          DOI: 10.1021/cb900195c

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   5.100


  36 in total

Review 1.  Structure--function relationships in HIV-1 Nef.

Authors:  M Geyer; O T Fackler; B M Peterlin
Journal:  EMBO Rep       Date:  2001-07       Impact factor: 8.807

2.  Dynamic Nef and Nef dynamics: how structure could explain the complex activities of this small HIV protein.

Authors:  S T Arold; A S Baur
Journal:  Trends Biochem Sci       Date:  2001-06       Impact factor: 13.807

Review 3.  Structure and regulation of Src family kinases.

Authors:  Titus J Boggon; Michael J Eck
Journal:  Oncogene       Date:  2004-10-18       Impact factor: 9.867

4.  Allosteric loss-of-function mutations in HIV-1 Nef from a long-term non-progressor.

Authors:  Ronald P Trible; Lori Emert-Sedlak; Thomas E Wales; Velpandi Ayyavoo; John R Engen; Thomas E Smithgall
Journal:  J Mol Biol       Date:  2007-09-11       Impact factor: 5.469

Review 5.  Staurosporine, K-252 and UCN-01: potent but nonspecific inhibitors of protein kinases.

Authors:  U T Rüegg; G M Burgess
Journal:  Trends Pharmacol Sci       Date:  1989-06       Impact factor: 14.819

6.  Brief report: absence of intact nef sequences in a long-term survivor with nonprogressive HIV-1 infection.

Authors:  F Kirchhoff; T C Greenough; D B Brettler; J L Sullivan; R C Desrosiers
Journal:  N Engl J Med       Date:  1995-01-26       Impact factor: 91.245

7.  The crystal structure of HIV-1 Nef protein bound to the Fyn kinase SH3 domain suggests a role for this complex in altered T cell receptor signaling.

Authors:  S Arold; P Franken; M P Strub; F Hoh; S Benichou; R Benarous; C Dumas
Journal:  Structure       Date:  1997-10-15       Impact factor: 5.006

Review 8.  Nef: "necessary and enforcing factor" in HIV infection.

Authors:  Ajith M Joseph; Manish Kumar; Debashis Mitra
Journal:  Curr HIV Res       Date:  2005-01       Impact factor: 1.581

9.  RT loop flexibility enhances the specificity of Src family SH3 domains for HIV-1 Nef.

Authors:  S Arold; R O'Brien; P Franken; M P Strub; F Hoh; C Dumas; J E Ladbury
Journal:  Biochemistry       Date:  1998-10-20       Impact factor: 3.162

10.  HIV-1 Nef promotes survival of myeloid cells by a Stat3-dependent pathway.

Authors:  S D Briggs; B Scholtz; J M Jacque; S Swingler; M Stevenson; T E Smithgall
Journal:  J Biol Chem       Date:  2001-04-27       Impact factor: 5.486

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  41 in total

1.  Dynamics of the Tec-family tyrosine kinase SH3 domains.

Authors:  Justin M Roberts; Sreya Tarafdar; Raji E Joseph; Amy H Andreotti; Thomas E Smithgall; John R Engen; Thomas E Wales
Journal:  Protein Sci       Date:  2016-03-18       Impact factor: 6.725

Review 2.  Viral proteins and Src family kinases: Mechanisms of pathogenicity from a "liaison dangereuse".

Authors:  Mario Angelo Pagano; Elena Tibaldi; Giorgio Palù; Anna Maria Brunati
Journal:  World J Virol       Date:  2013-05-12

3.  Synthesis and structure-activity analysis of diphenylpyrazolodiazene inhibitors of the HIV-1 Nef virulence factor.

Authors:  Prema C Iyer; Jielu Zhao; Lori A Emert-Sedlak; Kerry K Moore; Thomas E Smithgall; Billy W Day
Journal:  Bioorg Med Chem Lett       Date:  2014-02-26       Impact factor: 2.823

Review 4.  Small molecule inhibitors of the HIV-1 virulence factor, Nef.

Authors:  Thomas E Smithgall; Gary Thomas
Journal:  Drug Discov Today Technol       Date:  2013-12

5.  Interaction with the Src homology (SH3-SH2) region of the Src-family kinase Hck structures the HIV-1 Nef dimer for kinase activation and effector recruitment.

Authors:  John Jeff Alvarado; Sreya Tarafdar; Joanne I Yeh; Thomas E Smithgall
Journal:  J Biol Chem       Date:  2014-08-13       Impact factor: 5.157

6.  Tight-Binding Hydroxypyrazole HIV-1 Nef Inhibitors Suppress Viral Replication in Donor Mononuclear Cells and Reverse Nef-Mediated MHC-I Downregulation.

Authors:  Haibin Shi; Colin M Tice; Lori Emert-Sedlak; Li Chen; Wing Fai Li; Marianne Carlsen; Jay E Wrobel; Allen B Reitz; Thomas E Smithgall
Journal:  ACS Infect Dis       Date:  2019-12-16       Impact factor: 5.084

Review 7.  Structure, function, and inhibitor targeting of HIV-1 Nef-effector kinase complexes.

Authors:  Ryan P Staudt; John J Alvarado; Lori A Emert-Sedlak; Haibin Shi; Sherry T Shu; Thomas E Wales; John R Engen; Thomas E Smithgall
Journal:  J Biol Chem       Date:  2020-08-29       Impact factor: 5.157

8.  Nef homodimers down-regulate SERINC5 by AP-2-mediated endocytosis to promote HIV-1 infectivity.

Authors:  Ryan P Staudt; Thomas E Smithgall
Journal:  J Biol Chem       Date:  2020-09-01       Impact factor: 5.157

9.  Identification of a novel binding site between HIV type 1 Nef C-terminal flexible loop and AP2 required for Nef-mediated CD4 downregulation.

Authors:  Yong-Jiu Jin; Catherine Yi Cai; Mihaly Mezei; Michael Ohlmeyer; Roberto Sanchez; Steven J Burakoff
Journal:  AIDS Res Hum Retroviruses       Date:  2012-12-31       Impact factor: 2.205

10.  Effector kinase coupling enables high-throughput screens for direct HIV-1 Nef antagonists with antiretroviral activity.

Authors:  Lori A Emert-Sedlak; Purushottam Narute; Sherry T Shu; Jerrod A Poe; Haibin Shi; Naveena Yanamala; John Jeff Alvarado; John S Lazo; Joanne I Yeh; Paul A Johnston; Thomas E Smithgall
Journal:  Chem Biol       Date:  2013-01-24
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