Literature DB >> 23352142

Effector kinase coupling enables high-throughput screens for direct HIV-1 Nef antagonists with antiretroviral activity.

Lori A Emert-Sedlak1, Purushottam Narute, Sherry T Shu, Jerrod A Poe, Haibin Shi, Naveena Yanamala, John Jeff Alvarado, John S Lazo, Joanne I Yeh, Paul A Johnston, Thomas E Smithgall.   

Abstract

HIV-1 Nef, a critical AIDS progression factor, represents an important target protein for antiretroviral drug discovery. Because Nef lacks intrinsic enzymatic activity, we developed an assay that couples Nef to the activation of Hck, a Src family member and Nef effector protein. Using this assay, we screened a large, diverse chemical library and identified small molecules that block Nef-dependent Hck activity with low micromolar potency. Of these, a diphenylpyrazolo compound demonstrated submicromolar potency in HIV-1 replication assays against a broad range of primary Nef variants. This compound binds directly to Nef via a pocket formed by the Nef dimerization interface and disrupts Nef dimerization in cells. Coupling of nonenzymatic viral accessory factors to host cell effector proteins amenable to high-throughput screening may represent a general strategy for the discovery of new antimicrobial agents.
Copyright © 2013 Elsevier Ltd. All rights reserved.

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Year:  2013        PMID: 23352142      PMCID: PMC3559019          DOI: 10.1016/j.chembiol.2012.11.005

Source DB:  PubMed          Journal:  Chem Biol        ISSN: 1074-5521


  41 in total

1.  Mutation of a conserved residue (D123) required for oligomerization of human immunodeficiency virus type 1 Nef protein abolishes interaction with human thioesterase and results in impairment of Nef biological functions.

Authors:  L X Liu; N Heveker; O T Fackler; S Arold; S Le Gall; K Janvier; B M Peterlin; C Dumas; O Schwartz; S Benichou; R Benarous
Journal:  J Virol       Date:  2000-06       Impact factor: 5.103

Review 2.  Structure--function relationships in HIV-1 Nef.

Authors:  M Geyer; O T Fackler; B M Peterlin
Journal:  EMBO Rep       Date:  2001-07       Impact factor: 8.807

3.  Dynamic Nef and Nef dynamics: how structure could explain the complex activities of this small HIV protein.

Authors:  S T Arold; A S Baur
Journal:  Trends Biochem Sci       Date:  2001-06       Impact factor: 13.807

4.  Protein protein interaction inhibition (2P2I) combining high throughput and virtual screening: Application to the HIV-1 Nef protein.

Authors:  Stéphane Betzi; Audrey Restouin; Sandrine Opi; Stefan T Arold; Isabelle Parrot; Françoise Guerlesquin; Xavier Morelli; Yves Collette
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-27       Impact factor: 11.205

5.  Allosteric loss-of-function mutations in HIV-1 Nef from a long-term non-progressor.

Authors:  Ronald P Trible; Lori Emert-Sedlak; Thomas E Wales; Velpandi Ayyavoo; John R Engen; Thomas E Smithgall
Journal:  J Mol Biol       Date:  2007-09-11       Impact factor: 5.469

6.  Genes regulating HLA class I antigen expression in T-B lymphoblast hybrids.

Authors:  R D Salter; D N Howell; P Cresswell
Journal:  Immunogenetics       Date:  1985       Impact factor: 2.846

7.  Brief report: absence of intact nef sequences in a long-term survivor with nonprogressive HIV-1 infection.

Authors:  F Kirchhoff; T C Greenough; D B Brettler; J L Sullivan; R C Desrosiers
Journal:  N Engl J Med       Date:  1995-01-26       Impact factor: 91.245

Review 8.  Nef: "necessary and enforcing factor" in HIV infection.

Authors:  Ajith M Joseph; Manish Kumar; Debashis Mitra
Journal:  Curr HIV Res       Date:  2005-01       Impact factor: 1.581

9.  Effects of CCR5 and CD4 cell surface concentrations on infections by macrophagetropic isolates of human immunodeficiency virus type 1.

Authors:  E J Platt; K Wehrly; S E Kuhmann; B Chesebro; D Kabat
Journal:  J Virol       Date:  1998-04       Impact factor: 5.103

10.  HIV-1 Nef dimerization is required for Nef-mediated receptor downregulation and viral replication.

Authors:  Jerrod A Poe; Thomas E Smithgall
Journal:  J Mol Biol       Date:  2009-09-23       Impact factor: 5.469

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  31 in total

1.  Dynamics of the Tec-family tyrosine kinase SH3 domains.

Authors:  Justin M Roberts; Sreya Tarafdar; Raji E Joseph; Amy H Andreotti; Thomas E Smithgall; John R Engen; Thomas E Wales
Journal:  Protein Sci       Date:  2016-03-18       Impact factor: 6.725

2.  Synthesis and structure-activity analysis of diphenylpyrazolodiazene inhibitors of the HIV-1 Nef virulence factor.

Authors:  Prema C Iyer; Jielu Zhao; Lori A Emert-Sedlak; Kerry K Moore; Thomas E Smithgall; Billy W Day
Journal:  Bioorg Med Chem Lett       Date:  2014-02-26       Impact factor: 2.823

Review 3.  Small molecule inhibitors of the HIV-1 virulence factor, Nef.

Authors:  Thomas E Smithgall; Gary Thomas
Journal:  Drug Discov Today Technol       Date:  2013-12

4.  Interaction with the Src homology (SH3-SH2) region of the Src-family kinase Hck structures the HIV-1 Nef dimer for kinase activation and effector recruitment.

Authors:  John Jeff Alvarado; Sreya Tarafdar; Joanne I Yeh; Thomas E Smithgall
Journal:  J Biol Chem       Date:  2014-08-13       Impact factor: 5.157

5.  Tight-Binding Hydroxypyrazole HIV-1 Nef Inhibitors Suppress Viral Replication in Donor Mononuclear Cells and Reverse Nef-Mediated MHC-I Downregulation.

Authors:  Haibin Shi; Colin M Tice; Lori Emert-Sedlak; Li Chen; Wing Fai Li; Marianne Carlsen; Jay E Wrobel; Allen B Reitz; Thomas E Smithgall
Journal:  ACS Infect Dis       Date:  2019-12-16       Impact factor: 5.084

Review 6.  Structure, function, and inhibitor targeting of HIV-1 Nef-effector kinase complexes.

Authors:  Ryan P Staudt; John J Alvarado; Lori A Emert-Sedlak; Haibin Shi; Sherry T Shu; Thomas E Wales; John R Engen; Thomas E Smithgall
Journal:  J Biol Chem       Date:  2020-08-29       Impact factor: 5.157

7.  Nef homodimers down-regulate SERINC5 by AP-2-mediated endocytosis to promote HIV-1 infectivity.

Authors:  Ryan P Staudt; Thomas E Smithgall
Journal:  J Biol Chem       Date:  2020-09-01       Impact factor: 5.157

8.  Remodeling of HIV-1 Nef Structure by Src-Family Kinase Binding.

Authors:  Jamie A Moroco; John Jeff Alvarado; Ryan P Staudt; Haibin Shi; Thomas E Wales; Thomas E Smithgall; John R Engen
Journal:  J Mol Biol       Date:  2017-12-16       Impact factor: 5.469

9.  Development and validation of a high-content bimolecular fluorescence complementation assay for small-molecule inhibitors of HIV-1 Nef dimerization.

Authors:  Jerrod A Poe; Laura Vollmer; Andreas Vogt; Thomas E Smithgall
Journal:  J Biomol Screen       Date:  2013-11-26

10.  A dynamic G-quadruplex region regulates the HIV-1 long terminal repeat promoter.

Authors:  Rosalba Perrone; Matteo Nadai; Ilaria Frasson; Jerrod A Poe; Elena Butovskaya; Thomas E Smithgall; Manlio Palumbo; Giorgio Palù; Sara N Richter
Journal:  J Med Chem       Date:  2013-08-06       Impact factor: 7.446

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