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Literature DB >> 19797681

Darwinian alchemy: Human genes from noncoding DNA.

Adam Siepel¹.

Abstract

Entities: Gene Species

Mesh：

Substances：
DNA, Intergenic

Year: 2009 PMID： 19797681 PMCID： PMC2765273 DOI： 10.1101/gr.098376.109

Source DB: PubMed Journal: Genome Res ISSN： 1088-9051 Impact factor: 9.043

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19 in total

1. Evolutionary fate of retroposed gene copies in the human genome.

Authors: Nicolas Vinckenbosch; Isabelle Dupanloup; Henrik Kaessmann
Journal: Proc Natl Acad Sci U S A Date: 2006-02-21 Impact factor: 11.205

2. Recent de novo origin of human protein-coding genes.

Authors: David G Knowles; Aoife McLysaght
Journal: Genome Res Date: 2009-09-02 Impact factor: 9.043

Review 3. A rule for termination-codon position within intron-containing genes: when nonsense affects RNA abundance.

Authors: E Nagy; L E Maquat
Journal: Trends Biochem Sci Date: 1998-06 Impact factor: 13.807

4. Novel genes derived from noncoding DNA in Drosophila melanogaster are frequently X-linked and exhibit testis-biased expression.

Authors: Mia T Levine; Corbin D Jones; Andrew D Kern; Heather A Lindfors; David J Begun
Journal: Proc Natl Acad Sci U S A Date: 2006-06-15 Impact factor: 11.205

5. Alu sequences in the coding regions of mRNA: a source of protein variability.

Authors: W Makałowski; G A Mitchell; D Labuda
Journal: Trends Genet Date: 1994-06 Impact factor: 11.639

6. The spandrels of San Marco and the Panglossian paradigm: a critique of the adaptationist programme.

Authors: S J Gould; R C Lewontin
Journal: Proc R Soc Lond B Biol Sci Date: 1979-09-21

7. Targeted discovery of novel human exons by comparative genomics.

Authors: Adam Siepel; Mark Diekhans; Brona Brejová; Laura Langton; Michael Stevens; Charles L G Comstock; Colleen Davis; Brent Ewing; Shelly Oommen; Christopher Lau; Hung-Chun Yu; Jianfeng Li; Bruce A Roe; Phil Green; Daniela S Gerhard; Gary Temple; David Haussler; Michael R Brent
Journal: Genome Res Date: 2007-11-07 Impact factor: 9.043

8. Origin of primate orphan genes: a comparative genomics approach.

Authors: Macarena Toll-Riera; Nina Bosch; Nicolás Bellora; Robert Castelo; Lluis Armengol; Xavier Estivill; M Mar Albà
Journal: Mol Biol Evol Date: 2008-12-08 Impact factor: 16.240

9. Distinguishing protein-coding and noncoding genes in the human genome.

Authors: Michele Clamp; Ben Fry; Mike Kamal; Xiaohui Xie; James Cuff; Michael F Lin; Manolis Kellis; Kerstin Lindblad-Toh; Eric S Lander
Journal: Proc Natl Acad Sci U S A Date: 2007-11-26 Impact factor: 11.205

10. On the origin of new genes in Drosophila.

Authors: Qi Zhou; Guojie Zhang; Yue Zhang; Shiyu Xu; Ruoping Zhao; Zubing Zhan; Xin Li; Yun Ding; Shuang Yang; Wen Wang
Journal: Genome Res Date: 2008-06-11 Impact factor: 9.043

28 in total

1. DNA-energetics-based analyses suggest additional genes in prokaryotes.

Authors: Garima Khandelwal; Jalaj Gupta; B Jayaram
Journal: J Biosci Date: 2012-07 Impact factor: 1.826

Review 2. The evolutionary origin of orphan genes.

Authors: Diethard Tautz; Tomislav Domazet-Lošo
Journal: Nat Rev Genet Date: 2011-08-31 Impact factor: 53.242

3. Multi-step formation, evolution, and functionalization of new cytoplasmic male sterility genes in the plant mitochondrial genomes.

Authors: Huiwu Tang; Xingmei Zheng; Chuliang Li; Xianrong Xie; Yuanling Chen; Letian Chen; Xiucai Zhao; Huiqi Zheng; Jiajian Zhou; Shan Ye; Jingxin Guo; Yao-Guang Liu
Journal: Cell Res Date: 2016-10-11 Impact factor: 25.617

Darwinian alchemy: Human genes from noncoding DNA.

1. Evolutionary fate of retroposed gene copies in the human genome.

2. Recent de novo origin of human protein-coding genes.

Review 3. A rule for termination-codon position within intron-containing genes: when nonsense affects RNA abundance.

4. Novel genes derived from noncoding DNA in Drosophila melanogaster are frequently X-linked and exhibit testis-biased expression.

5. Alu sequences in the coding regions of mRNA: a source of protein variability.

6. The spandrels of San Marco and the Panglossian paradigm: a critique of the adaptationist programme.

7. Targeted discovery of novel human exons by comparative genomics.

8. Origin of primate orphan genes: a comparative genomics approach.

9. Distinguishing protein-coding and noncoding genes in the human genome.

10. On the origin of new genes in Drosophila.

1. DNA-energetics-based analyses suggest additional genes in prokaryotes.

Review 2. The evolutionary origin of orphan genes.

3. Multi-step formation, evolution, and functionalization of new cytoplasmic male sterility genes in the plant mitochondrial genomes.

Review 4. Open questions in the study of de novo genes: what, how and why.

5. A Molecular Portrait of De Novo Genes in Yeasts.

6. A human-specific de novo protein-coding gene associated with human brain functions.

Review 7. The persistent contributions of RNA to eukaryotic gen(om)e architecture and cellular function.

8. Interaction-based evolution: how natural selection and nonrandom mutation work together.

9. Hominoid-specific de novo protein-coding genes originating from long non-coding RNAs.

10. De novo origin of protein-coding genes in murine rodents.