Literature DB >> 19797044

Requirement for the ERI/DICER complex in endogenous RNA interference and sperm development in Caenorhabditis elegans.

Derek M Pavelec1, Jennifer Lachowiec, Thomas F Duchaine, Harold E Smith, Scott Kennedy.   

Abstract

Small regulatory RNAs are key regulators of gene expression. One class of small regulatory RNAs, termed the endogenous small interfering RNAs (endo siRNAs), is thought to negatively regulate cellular transcripts via an RNA interference (RNAi)-like mechanism termed endogenous RNAi (endo RNAi). A complex of proteins composed of ERI-1/3/5, RRF-3, and DICER (the ERI/DICER complex) mediates endo RNAi processes in Caenorhabditis elegans. We conducted a genetic screen to identify additional components of the endo RNAi machinery. Our screen recovered alleles of eri-9, which encodes a novel DICER-interacting protein, and a missense mutation within the helicase domain of DICER [DCR-1(G492R)]. ERI-9(-) and DCR-1(G492) animals exhibit defects in endo siRNA expression and a concomitant failure to regulate mRNAs that exhibit sequence homology to these endo siRNAs, indicating that ERI-9 and the DCR-1 helicase domain function in the C. elegans endo RNAi pathway. We define a subset of Eri mutant animals (including eri-1, rrf-3, eri-3, and dcr-1, but not eri-9 or ergo-1) that exhibit temperature-sensitive, sperm-specific sterility and defects in X chromosome segregation. Among these mutants we find multiple aberrations in sperm development beginning with cytokinesis and extending through terminal differentiation. These results identify novel components of the endo RNAi machinery, demonstrate differential requirements for the Eri factors in the sperm-producing germline, and begin to delineate the functional requirement for the ERI/DICER complex in sperm development.

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Year:  2009        PMID: 19797044      PMCID: PMC2787421          DOI: 10.1534/genetics.109.108134

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  57 in total

1.  Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C. elegans.

Authors:  R F Ketting; S E Fischer; E Bernstein; T Sijen; G J Hannon; R H Plasterk
Journal:  Genes Dev       Date:  2001-10-15       Impact factor: 11.361

Review 2.  Small RNAs: classification, biogenesis, and function.

Authors:  V Narry Kim
Journal:  Mol Cells       Date:  2005-02-28       Impact factor: 5.034

3.  Somatic misexpression of germline P granules and enhanced RNA interference in retinoblastoma pathway mutants.

Authors:  Duo Wang; Scott Kennedy; Darryl Conte; John K Kim; Harrison W Gabel; Ravi S Kamath; Craig C Mello; Gary Ruvkun
Journal:  Nature       Date:  2005-07-28       Impact factor: 49.962

4.  Functional proteomics reveals the biochemical niche of C. elegans DCR-1 in multiple small-RNA-mediated pathways.

Authors:  Thomas F Duchaine; James A Wohlschlegel; Scott Kennedy; Yanxia Bei; Darryl Conte; Kaming Pang; Daniel R Brownell; Sandra Harding; Shohei Mitani; Gary Ruvkun; John R Yates; Craig C Mello
Journal:  Cell       Date:  2006-01-27       Impact factor: 41.582

5.  Analysis of a piwi-related gene implicates small RNAs in genome rearrangement in tetrahymena.

Authors:  Kazufumi Mochizuki; Noah A Fine; Toshitaka Fujisawa; Martin A Gorovsky
Journal:  Cell       Date:  2002-09-20       Impact factor: 41.582

6.  Genome-wide germline-enriched and sex-biased expression profiles in Caenorhabditis elegans.

Authors:  Valerie Reinke; Inigo San Gil; Samuel Ward; Keith Kazmer
Journal:  Development       Date:  2003-12-10       Impact factor: 6.868

7.  Nuclear export of microRNA precursors.

Authors:  Elsebet Lund; Stephan Güttinger; Angelo Calado; James E Dahlberg; Ulrike Kutay
Journal:  Science       Date:  2003-11-20       Impact factor: 47.728

8.  An endogenous small interfering RNA pathway in Drosophila.

Authors:  Benjamin Czech; Colin D Malone; Rui Zhou; Alexander Stark; Catherine Schlingeheyde; Monica Dus; Norbert Perrimon; Manolis Kellis; James A Wohlschlegel; Ravi Sachidanandam; Gregory J Hannon; Julius Brennecke
Journal:  Nature       Date:  2008-05-07       Impact factor: 49.962

9.  An Argonaute transports siRNAs from the cytoplasm to the nucleus.

Authors:  Shouhong Guang; Aaron F Bochner; Derek M Pavelec; Kirk B Burkhart; Sandra Harding; Jennifer Lachowiec; Scott Kennedy
Journal:  Science       Date:  2008-07-25       Impact factor: 47.728

10.  Endogenous siRNAs derived from transposons and mRNAs in Drosophila somatic cells.

Authors:  Megha Ghildiyal; Hervé Seitz; Michael D Horwich; Chengjian Li; Tingting Du; Soohyun Lee; Jia Xu; Ellen L W Kittler; Maria L Zapp; Zhiping Weng; Phillip D Zamore
Journal:  Science       Date:  2008-04-10       Impact factor: 47.728

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  70 in total

1.  Distinct phases of siRNA synthesis in an endogenous RNAi pathway in C. elegans soma.

Authors:  Jonathan I Gent; Ayelet T Lamm; Derek M Pavelec; Jay M Maniar; Poornima Parameswaran; Li Tao; Scott Kennedy; Andrew Z Fire
Journal:  Mol Cell       Date:  2010-01-28       Impact factor: 17.970

2.  Dicer's helicase domain is required for accumulation of some, but not all, C. elegans endogenous siRNAs.

Authors:  Noah C Welker; Derek M Pavelec; David A Nix; Thomas F Duchaine; Scott Kennedy; Brenda L Bass
Journal:  RNA       Date:  2010-03-30       Impact factor: 4.942

3.  Tissue specificity of Caenorhabditis elegans enhanced RNA interference mutants.

Authors:  Jimmy J Zhuang; Craig P Hunter
Journal:  Genetics       Date:  2011-03-08       Impact factor: 4.562

4.  Sequential rounds of RNA-dependent RNA transcription drive endogenous small-RNA biogenesis in the ERGO-1/Argonaute pathway.

Authors:  Jessica J Vasale; Weifeng Gu; Caroline Thivierge; Pedro J Batista; Julie M Claycomb; Elaine M Youngman; Thomas F Duchaine; Craig C Mello; Darryl Conte
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-02       Impact factor: 11.205

5.  CSR-1 and P granules suppress sperm-specific transcription in the C. elegans germline.

Authors:  Anne C Campbell; Dustin L Updike
Journal:  Development       Date:  2015-05-15       Impact factor: 6.868

6.  The RNA phosphatase PIR-1 regulates endogenous small RNA pathways in C. elegans.

Authors:  Daniel A Chaves; Hui Dai; Lichao Li; James J Moresco; Myung Eun Oh; Darryl Conte; John R Yates; Craig C Mello; Weifeng Gu
Journal:  Mol Cell       Date:  2020-12-29       Impact factor: 17.970

7.  Protection from feed-forward amplification in an amplified RNAi mechanism.

Authors:  Julia Pak; Jay Mahesh Maniar; Cecilia Cabral Mello; Andrew Fire
Journal:  Cell       Date:  2012-11-09       Impact factor: 41.582

Review 8.  Eri1: a conserved enzyme at the crossroads of multiple RNA-processing pathways.

Authors:  Molly F Thomas; Noelle D L'Etoile; K Mark Ansel
Journal:  Trends Genet       Date:  2014-06-12       Impact factor: 11.639

9.  The nuclear argonaute NRDE-3 contributes to transitive RNAi in Caenorhabditis elegans.

Authors:  Jimmy J Zhuang; Stephen A Banse; Craig P Hunter
Journal:  Genetics       Date:  2013-03-02       Impact factor: 4.562

10.  Argonautes promote male fertility and provide a paternal memory of germline gene expression in C. elegans.

Authors:  Colin C Conine; James J Moresco; Weifeng Gu; Masaki Shirayama; Darryl Conte; John R Yates; Craig C Mello
Journal:  Cell       Date:  2013-12-19       Impact factor: 41.582

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