Literature DB >> 19795410

Stripe formation in the early fly embryo: principles, models, and networks.

Dmitri Papatsenko1.   

Abstract

Early development of animal embryos begins from spatially distributed products of gene expression, i.e., gradients. While maternal and early zygotic genes form broad and/or terminal gradients, their direct targets appear later on as relatively narrow stripes, which foreshadow presumptive germ layers or future segments. Evidently, stripe expression of the zygotic genes is among the key mechanisms of embryo patterning. In this paper, known qualitative and quantitative models for the stripe formation are considered on the example of early embryogenesis of Drosophila. The current model analysis emphasizes the role of spatial information flow in development. Discussion is given on frequent network motifs, pointing to spatial stripe formation solutions.

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Year:  2009        PMID: 19795410     DOI: 10.1002/bies.200900096

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  11 in total

1.  Dynamic model for the coordination of two enhancers of broad by EGFR signaling.

Authors:  Lily S Cheung; David S A Simakov; Alisa Fuchs; George Pyrowolakis; Stanislav Y Shvartsman
Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-14       Impact factor: 11.205

2.  Positional information, positional error, and readout precision in morphogenesis: a mathematical framework.

Authors:  Gašper Tkačik; Julien O Dubuis; Mariela D Petkova; Thomas Gregor
Journal:  Genetics       Date:  2014-10-31       Impact factor: 4.562

Review 3.  Pattern, growth, and control.

Authors:  Arthur D Lander
Journal:  Cell       Date:  2011-03-18       Impact factor: 41.582

Review 4.  The embryo as a laboratory: quantifying transcription in Drosophila.

Authors:  Thomas Gregor; Hernan G Garcia; Shawn C Little
Journal:  Trends Genet       Date:  2014-07-06       Impact factor: 11.639

5.  Design principles of stripe-forming motifs: the role of positive feedback.

Authors:  Andreea Munteanu; James Cotterell; Ricard V Solé; James Sharpe
Journal:  Sci Rep       Date:  2014-05-16       Impact factor: 4.379

6.  Spatiotemporal network motif reveals the biological traits of developmental gene regulatory networks in Drosophila melanogaster.

Authors:  Man-Sun Kim; Jeong-Rae Kim; Dongsan Kim; Arthur D Lander; Kwang-Hyun Cho
Journal:  BMC Syst Biol       Date:  2012-05-01

7.  The Drosophila gap gene network is composed of two parallel toggle switches.

Authors:  Dmitri Papatsenko; Michael Levine
Journal:  PLoS One       Date:  2011-07-01       Impact factor: 3.240

8.  Accurate measurements of dynamics and reproducibility in small genetic networks.

Authors:  Julien O Dubuis; Reba Samanta; Thomas Gregor
Journal:  Mol Syst Biol       Date:  2013       Impact factor: 11.429

9.  Cellular resolution models for even skipped regulation in the entire Drosophila embryo.

Authors:  Garth R Ilsley; Jasmin Fisher; Rolf Apweiler; Angela H De Pace; Nicholas M Luscombe
Journal:  Elife       Date:  2013-08-06       Impact factor: 8.140

10.  Insulated transcriptional elements enable precise design of genetic circuits.

Authors:  Yeqing Zong; Haoqian M Zhang; Cheng Lyu; Xiangyu Ji; Junran Hou; Xian Guo; Qi Ouyang; Chunbo Lou
Journal:  Nat Commun       Date:  2017-07-03       Impact factor: 14.919

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