Literature DB >> 19787774

Crystal structure of the DNA gyrase GyrA N-terminal domain from Mycobacterium tuberculosis.

Elsa M Tretter1, Allyn J Schoeffler, Shellie R Weisfield, James M Berger.   

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Year:  2010        PMID： 19787774      PMCID： PMC4284962          DOI： 10.1002/prot.22600

Source DB:  PubMed          Journal:  Proteins        ISSN： 0887-3585


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  14 in total

1.  Structure validation by Calpha geometry: phi,psi and Cbeta deviation.

Authors:  Simon C Lovell; Ian W Davis; W Bryan Arendall; Paul I W de Bakker; J Michael Word; Michael G Prisant; Jane S Richardson; David C Richardson
Journal:  Proteins       Date:  2003-02-15

2.  Suite of three protein crystallography beamlines with single superconducting bend magnet as the source.

Authors:  Alastair A MacDowell; Rich S Celestre; Malcolm Howells; Wayne McKinney; James Krupnick; Daniella Cambie; Edward E Domning; Robert M Duarte; Nicholas Kelez; David W Plate; Carl W Cork; Thomas N Earnest; Jeffery Dickert; George Meigs; Corie Ralston; James M Holton; Tom Alber; James M Berger; David A Agard; Howard A Padmore
Journal:  J Synchrotron Radiat       Date:  2004-10-22       Impact factor: 2.616

3.  The structural basis for substrate specificity in DNA topoisomerase IV.

Authors:  Kevin D Corbett; Allyn J Schoeffler; Nathan D Thomsen; James M Berger
Journal:  J Mol Biol       Date:  2005-08-19       Impact factor: 5.469

4.  Structural basis for gate-DNA recognition and bending by type IIA topoisomerases.

Authors:  Ken C Dong; James M Berger
Journal:  Nature       Date:  2007-12-20       Impact factor: 49.962

5.  Tobacco etch virus protease: mechanism of autolysis and rational design of stable mutants with wild-type catalytic proficiency.

Authors:  R B Kapust; J Tözsér; J D Fox; D E Anderson; S Cherry; T D Copeland; D S Waugh
Journal:  Protein Eng       Date:  2001-12

Review 6.  DNA topoisomerases: harnessing and constraining energy to govern chromosome topology.

Authors:  Allyn J Schoeffler; James M Berger
Journal:  Q Rev Biophys       Date:  2008-02       Impact factor: 5.318

7.  DNA gyrase action involves the introduction of transient double-strand breaks into DNA.

Authors:  K Mizuuchi; L M Fisher; M H O'Dea; M Gellert
Journal:  Proc Natl Acad Sci U S A       Date:  1980-04       Impact factor: 11.205

8.  Crystal structure of the breakage-reunion domain of DNA gyrase.

Authors:  J H Morais Cabral; A P Jackson; C V Smith; N Shikotra; A Maxwell; R C Liddington
Journal:  Nature       Date:  1997-08-28       Impact factor: 49.962

9.  Covalent bonds between protein and DNA. Formation of phosphotyrosine linkage between certain DNA topoisomerases and DNA.

Authors:  Y C Tse; K Kirkegaard; J C Wang
Journal:  J Biol Chem       Date:  1980-06-25       Impact factor: 5.157

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304
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  18 in total

1.  Type IIA topoisomerase inhibition by a new class of antibacterial agents.

Authors:  Benjamin D Bax; Pan F Chan; Drake S Eggleston; Andrew Fosberry; Daniel R Gentry; Fabrice Gorrec; Ilaria Giordano; Michael M Hann; Alan Hennessy; Martin Hibbs; Jianzhong Huang; Emma Jones; Jo Jones; Kristin Koretke Brown; Ceri J Lewis; Earl W May; Martin R Saunders; Onkar Singh; Claus E Spitzfaden; Carol Shen; Anthony Shillings; Andrew J Theobald; Alexandre Wohlkonig; Neil D Pearson; Michael N Gwynn
Journal:  Nature       Date:  2010-08-04       Impact factor: 49.962

2.  Combinatorially-generated library of 6-fluoroquinolone analogs as potential novel antitubercular agents: a chemometric and molecular modeling assessment.

Authors:  Nikola Minovski; Andrej Perdih; Tom Solmajer
Journal:  J Mol Model       Date:  2011-08-12       Impact factor: 1.810

3.  Withdrawn

Authors: 
Journal:  Infect Disord Drug Targets       Date:  2012-11-16

4.  Preliminary X-ray crystallographic analysis of the breakage-reunion domain of the GyrA subunit of DNA gyrase from Colwellia psychrerythraea strain 34H.

Authors:  Ha Yun Jung; Kyung Ha Kim; Ji Hye Hyoung; Mi Ra Han; Hyun Kyoung Kim; Ki Jeung Lee; Yangmee Kim; Hak Jun Kim; Yong Seok Heo
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-03-31

5.  Fluoroquinolone and quinazolinedione activities against wild-type and gyrase mutant strains of Mycobacterium smegmatis.

Authors:  Muhammad Malik; Kevin R Marks; Arkady Mustaev; Xilin Zhao; Kalyan Chavda; Robert J Kerns; Karl Drlica
Journal:  Antimicrob Agents Chemother       Date:  2011-03-07       Impact factor: 5.191

6.  Molecular characterization of fluoroquinolone resistance in Mycobacterium tuberculosis: functional analysis of gyrA mutation at position 74.

Authors:  Ricky W T Lau; Pak-Leung Ho; Richard Y T Kao; Wing-Wai Yew; Terrence C K Lau; Vincent C C Cheng; Kwok-Yung Yuen; Stephen K W Tsui; Xinchun Chen; Wing-Cheong Yam
Journal:  Antimicrob Agents Chemother       Date:  2010-10-18       Impact factor: 5.191

7.  Anti-tubercular drug designing by structure based screening of combinatorial libraries.

Authors:  Payel Ghosh; Manish C Bagchi
Journal:  J Mol Model       Date:  2010-10-16       Impact factor: 1.810

8.  The structure of DNA-bound human topoisomerase II alpha: conformational mechanisms for coordinating inter-subunit interactions with DNA cleavage.

Authors:  Timothy J Wendorff; Bryan H Schmidt; Pauline Heslop; Caroline A Austin; James M Berger
Journal:  J Mol Biol       Date:  2012-07-25       Impact factor: 5.469

9.  Crystal structure and stability of gyrase-fluoroquinolone cleaved complexes from Mycobacterium tuberculosis.

Authors:  Tim R Blower; Benjamin H Williamson; Robert J Kerns; James M Berger
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-20       Impact factor: 11.205

10.  The naphthoquinone diospyrin is an inhibitor of DNA gyrase with a novel mechanism of action.

Authors:  Shantanu Karkare; Terence T H Chung; Frederic Collin; Lesley A Mitchenall; Adam R McKay; Sandra J Greive; Jacobus J M Meyer; Namrita Lall; Anthony Maxwell
Journal:  J Biol Chem       Date:  2012-12-28       Impact factor: 5.157
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