Literature DB >> 19773805

Mechanisms of alternative splicing regulation: insights from molecular and genomics approaches.

Mo Chen1, James L Manley.   

Abstract

Alternative splicing of mRNA precursors provides an important means of genetic control and is a crucial step in the expression of most genes. Alternative splicing markedly affects human development, and its misregulation underlies many human diseases. Although the mechanisms of alternative splicing have been studied extensively, until the past few years we had not begun to realize fully the diversity and complexity of alternative splicing regulation by an intricate protein-RNA network. Great progress has been made by studying individual transcripts and through genome-wide approaches, which together provide a better picture of the mechanistic regulation of alternative pre-mRNA splicing.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19773805      PMCID: PMC2958924          DOI: 10.1038/nrm2777

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   94.444


  163 in total

1.  The snoRNA HBII-52 regulates alternative splicing of the serotonin receptor 2C.

Authors:  Shivendra Kishore; Stefan Stamm
Journal:  Science       Date:  2005-12-15       Impact factor: 47.728

2.  The human SWI/SNF subunit Brm is a regulator of alternative splicing.

Authors:  Eric Batsché; Moshe Yaniv; Christian Muchardt
Journal:  Nat Struct Mol Biol       Date:  2005-12-11       Impact factor: 15.369

Review 3.  Alternative splicing: new insights from global analyses.

Authors:  Benjamin J Blencowe
Journal:  Cell       Date:  2006-07-14       Impact factor: 41.582

4.  Chromatin, transcript elongation and alternative splicing.

Authors:  Alberto R Kornblihtt
Journal:  Nat Struct Mol Biol       Date:  2006-01       Impact factor: 15.369

Review 5.  Spinal muscular atrophy: a deficiency in a ubiquitous protein; a motor neuron-specific disease.

Authors:  Umrao R Monani
Journal:  Neuron       Date:  2005-12-22       Impact factor: 17.173

6.  Genome-wide prediction of mammalian enhancers based on analysis of transcription-factor binding affinity.

Authors:  Outi Hallikas; Kimmo Palin; Natalia Sinjushina; Reetta Rautiainen; Juha Partanen; Esko Ukkonen; Jussi Taipale
Journal:  Cell       Date:  2006-01-13       Impact factor: 41.582

7.  RS domains contact splicing signals and promote splicing by a common mechanism in yeast through humans.

Authors:  Haihong Shen; Michael R Green
Journal:  Genes Dev       Date:  2006-06-09       Impact factor: 11.361

8.  Novel modes of splicing repression by PTB.

Authors:  Rachel Spellman; Christopher W J Smith
Journal:  Trends Biochem Sci       Date:  2006-01-05       Impact factor: 13.807

9.  Determinants of exon 7 splicing in the spinal muscular atrophy genes, SMN1 and SMN2.

Authors:  Luca Cartegni; Michelle L Hastings; John A Calarco; Elisa de Stanchina; Adrian R Krainer
Journal:  Am J Hum Genet       Date:  2005-11-16       Impact factor: 11.025

10.  Intronic binding sites for hnRNP A/B and hnRNP F/H proteins stimulate pre-mRNA splicing.

Authors:  Rebeca Martinez-Contreras; Jean-François Fisette; Faiz-ul Hassan Nasim; Richard Madden; Mélanie Cordeau; Benoit Chabot
Journal:  PLoS Biol       Date:  2006-01-10       Impact factor: 8.029

View more
  565 in total

1.  Centromere-associated protein E expresses a novel mRNA isoform in acute lymphoblastic leukemia.

Authors:  Cindy E Jiménez-Ávila; Vanessa Villegas-Ruíz; Marta Zapata-Tarres; Alejandra E Rubio-Portillo; Eleazar I Pérez López; Juan C Zenteno; Sergio Juárez-Méndez
Journal:  Int J Mol Epidemiol Genet       Date:  2018-10-20

2.  Conservation of an RNA regulatory map between Drosophila and mammals.

Authors:  Angela N Brooks; Li Yang; Michael O Duff; Kasper D Hansen; Jung W Park; Sandrine Dudoit; Steven E Brenner; Brenton R Graveley
Journal:  Genome Res       Date:  2010-10-04       Impact factor: 9.043

Review 3.  Turning on a fuel switch of cancer: hnRNP proteins regulate alternative splicing of pyruvate kinase mRNA.

Authors:  Mo Chen; Jian Zhang; James L Manley
Journal:  Cancer Res       Date:  2010-10-26       Impact factor: 12.701

4.  Intragenic alternative splicing coordination is essential for Caenorhabditis elegans slo-1 gene function.

Authors:  Dominique A Glauser; Brandon E Johnson; Richard W Aldrich; Miriam B Goodman
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-14       Impact factor: 11.205

5.  Vezf1 protein binding sites genome-wide are associated with pausing of elongating RNA polymerase II.

Authors:  Humaira Gowher; Kevin Brick; R Daniel Camerini-Otero; Gary Felsenfeld
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-30       Impact factor: 11.205

Review 6.  More than Just a Phase: Prions at the Crossroads of Epigenetic Inheritance and Evolutionary Change.

Authors:  Anupam K Chakravarty; Daniel F Jarosz
Journal:  J Mol Biol       Date:  2018-07-19       Impact factor: 5.469

7.  Integrative analysis of many RNA-seq datasets to study alternative splicing.

Authors:  Wenyuan Li; Chao Dai; Shuli Kang; Xianghong Jasmine Zhou
Journal:  Methods       Date:  2014-02-28       Impact factor: 3.608

Review 8.  Biology and clinical relevance of noncoding sno/scaRNAs.

Authors:  Thuy Cao; Sheeja Rajasingh; Saheli Samanta; Buddhadeb Dawn; Douglas C Bittel; Johnson Rajasingh
Journal:  Trends Cardiovasc Med       Date:  2017-08-12       Impact factor: 6.677

9.  MRPL33 and its splicing regulator hnRNPK are required for mitochondria function and implicated in tumor progression.

Authors:  L Liu; C Luo; Y Luo; L Chen; Y Liu; Y Wang; J Han; Y Zhang; N Wei; Z Xie; W Wu; G Wu; Y Feng
Journal:  Oncogene       Date:  2017-09-04       Impact factor: 9.867

Review 10.  Targeting RNA in mammalian systems with small molecules.

Authors:  Anita Donlic; Amanda E Hargrove
Journal:  Wiley Interdiscip Rev RNA       Date:  2018-05-03       Impact factor: 9.957

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.