Literature DB >> 19772830

Rheumatoid arthritis genetics: 2009 update.

Robert M Plenge1.   

Abstract

Recent human genetic discoveries have increased our understanding of rheumatoid arthritis (RA) susceptibility. Genome-wide association studies have expanded the number of validated RA risk loci beyond HLA-DRB1 "shared epitope" alleles to include additional major histocompatibility complex (MHC) risk alleles and more than 10 regions outside the MHC. The newly discovered risk alleles are common in the general population, have a modest effect on RA risk, and together explain less than 5% of the variance in disease risk. Whereas the actual causal mutation and causal gene for most loci remain to be determined, these studies are beginning to reveal general themes: many risk loci are associated with other autoimmune diseases; many genes fall within discrete biological pathways (eg, the nuclear factor kappa-light-chain-enhancer of activated B cells signaling pathway); and human genetics can group diseases into clinically meaningful subset categories (eg, presence or absence of autoantibodies). This review discusses recent RA genetic discoveries in terms of their potential to improve patient care.

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Year:  2009        PMID: 19772830     DOI: 10.1007/s11926-009-0050-0

Source DB:  PubMed          Journal:  Curr Rheumatol Rep        ISSN: 1523-3774            Impact factor:   4.592


  60 in total

Review 1.  Genome-wide association studies for common diseases and complex traits.

Authors:  Joel N Hirschhorn; Mark J Daly
Journal:  Nat Rev Genet       Date:  2005-02       Impact factor: 53.242

2.  Principal components analysis corrects for stratification in genome-wide association studies.

Authors:  Alkes L Price; Nick J Patterson; Robert M Plenge; Michael E Weinblatt; Nancy A Shadick; David Reich
Journal:  Nat Genet       Date:  2006-07-23       Impact factor: 38.330

3.  Genetic variability in the tumor necrosis factor-lymphotoxin region influences susceptibility to rheumatoid arthritis.

Authors:  B Mulcahy; F Waldron-Lynch; M F McDermott; C Adams; C I Amos; D K Zhu; R H Ward; D O Clegg; F Shanahan; M G Molloy; F O'Gara
Journal:  Am J Hum Genet       Date:  1996-09       Impact factor: 11.025

4.  The PTPN22 R620W polymorphism associates with RF positive rheumatoid arthritis in a dose-dependent manner but not with HLA-SE status.

Authors:  A T Lee; W Li; A Liew; C Bombardier; M Weisman; E M Massarotti; J Kent; F Wolfe; A B Begovich; P K Gregersen
Journal:  Genes Immun       Date:  2005-03       Impact factor: 2.676

5.  Analysis of single-nucleotide polymorphisms in Japanese rheumatoid arthritis patients shows additional susceptibility markers besides the classic shared epitope susceptibility sequences.

Authors:  Yuta Kochi; Ryo Yamada; Kyoko Kobayashi; Atsushi Takahashi; Akari Suzuki; Akihiro Sekine; Akihiko Mabuchi; Fumihiro Akiyama; Tatsuhiko Tsunoda; Yusuke Nakamura; Kazuhiko Yamamoto
Journal:  Arthritis Rheum       Date:  2004-01

6.  A missense single-nucleotide polymorphism in a gene encoding a protein tyrosine phosphatase (PTPN22) is associated with rheumatoid arthritis.

Authors:  Ann B Begovich; Victoria E H Carlton; Lee A Honigberg; Steven J Schrodi; Anand P Chokkalingam; Heather C Alexander; Kristin G Ardlie; Qiqing Huang; Ashley M Smith; Jill M Spoerke; Marion T Conn; Monica Chang; Sheng-Yung P Chang; Randall K Saiki; Joseph J Catanese; Diane U Leong; Veronica E Garcia; Linda B McAllister; Douglas A Jeffery; Annette T Lee; Franak Batliwalla; Elaine Remmers; Lindsey A Criswell; Michael F Seldin; Daniel L Kastner; Christopher I Amos; John J Sninsky; Peter K Gregersen
Journal:  Am J Hum Genet       Date:  2004-06-18       Impact factor: 11.025

7.  Genetic association of the major histocompatibility complex with rheumatoid arthritis implicates two non-DRB1 loci.

Authors:  Charlotte Vignal; Aruna T Bansal; David J Balding; Michael H Binks; Marion C Dickson; Doug S Montgomery; Anthony G Wilson
Journal:  Arthritis Rheum       Date:  2009-01

8.  Analysis of 17 autoimmune disease-associated variants in type 1 diabetes identifies 6q23/TNFAIP3 as a susceptibility locus.

Authors:  E Y M G Fung; D J Smyth; J M M Howson; J D Cooper; N M Walker; H Stevens; L S Wicker; J A Todd
Journal:  Genes Immun       Date:  2008-12-25       Impact factor: 2.676

9.  Re-evaluation of putative rheumatoid arthritis susceptibility genes in the post-genome wide association study era and hypothesis of a key pathway underlying susceptibility.

Authors:  Anne Barton; Wendy Thomson; Xiayi Ke; Steve Eyre; Anne Hinks; John Bowes; Laura Gibbons; Darren Plant; Anthony G Wilson; Ioanna Marinou; Ann Morgan; Paul Emery; Sophia Steer; Lynne Hocking; David M Reid; Paul Wordsworth; Pille Harrison; Jane Worthington
Journal:  Hum Mol Genet       Date:  2008-04-22       Impact factor: 6.150

10.  Rheumatoid arthritis susceptibility loci at chromosomes 10p15, 12q13 and 22q13.

Authors:  Anne Barton; Wendy Thomson; Xiayi Ke; Steve Eyre; Anne Hinks; John Bowes; Darren Plant; Laura J Gibbons; Anthony G Wilson; Deborah E Bax; Ann W Morgan; Paul Emery; Sophia Steer; Lynne Hocking; David M Reid; Paul Wordsworth; Pille Harrison; Jane Worthington
Journal:  Nat Genet       Date:  2008-09-14       Impact factor: 38.330

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  18 in total

1.  Pathogenetic, clinical and pharmaco-economic assessment in rheumatoid arthritis (RA).

Authors:  Gianfranco Ferraccioli; Elisa Gremese
Journal:  Intern Emerg Med       Date:  2011-10       Impact factor: 3.397

2.  Exploration of 3,6-dihydroimidazo(4,5-d)pyrrolo(2,3-b)pyridin-2(1H)-one derivatives as JAK inhibitors using various in silico techniques.

Authors:  Radhakrishnan S Jisha; Lilly Aswathy; Vijay H Masand; Jayant M Gajbhiye; Indira G Shibi
Journal:  In Silico Pharmacol       Date:  2017-10-12

3.  Robust interferon signature and suppressed tissue repair gene expression in synovial tissue from patients with postinfectious, Borrelia burgdorferi-induced Lyme arthritis.

Authors:  Robert B Lochhead; Sheila L Arvikar; John M Aversa; Ruslan I Sadreyev; Klemen Strle; Allen C Steere
Journal:  Cell Microbiol       Date:  2018-10-17       Impact factor: 3.715

Review 4.  Genetic and environmental risk factors for rheumatoid arthritis.

Authors:  Kevin D Deane; M Kristen Demoruelle; Lindsay B Kelmenson; Kristine A Kuhn; Jill M Norris; V Michael Holers
Journal:  Best Pract Res Clin Rheumatol       Date:  2017-09-18       Impact factor: 4.098

5.  Evaluation of 19 autoimmune disease-associated loci with rheumatoid arthritis in a Colombian population: evidence for replication and gene-gene interaction.

Authors:  Harshal A Deshmukh; Amit K Maiti; Xana R Kim-Howard; Adriana Rojas-Villarraga; Joel M Guthridge; Juan-Manuel Anaya; Swapan K Nath
Journal:  J Rheumatol       Date:  2011-07-15       Impact factor: 4.666

Review 6.  The genetics of juvenile idiopathic arthritis: what is new in 2010?

Authors:  Sheila Angeles-Han; Sampath Prahalad
Journal:  Curr Rheumatol Rep       Date:  2010-04       Impact factor: 4.592

Review 7.  Epigenetics in rheumatoid arthritis: a primer for rheumatologists.

Authors:  Nunzio Bottini; Gary S Firestein
Journal:  Curr Rheumatol Rep       Date:  2013-11       Impact factor: 4.592

8.  Evidence of the Immune Relevance of Prevotella copri, a Gut Microbe, in Patients With Rheumatoid Arthritis.

Authors:  Annalisa Pianta; Sheila Arvikar; Klemen Strle; Elise E Drouin; Qi Wang; Catherine E Costello; Allen C Steere
Journal:  Arthritis Rheumatol       Date:  2017-04-07       Impact factor: 10.995

9.  Functional genomics and rheumatoid arthritis: where have we been and where should we go?

Authors:  James N Jarvis; Mark Barton Frank
Journal:  Genome Med       Date:  2010-07-28       Impact factor: 11.117

10.  Pathway-based association analysis of two genome-wide screening data identifies rheumatoid arthritis-related pathways.

Authors:  M-M Zhang; Y-S Jiang; H-C Lv; H-B Mu; J Li; Z-W Shang; R-J Zhang
Journal:  Genes Immun       Date:  2014-08-07       Impact factor: 2.676

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