Literature DB >> 19771333

Green fluorescent protein: structure, folding and chromophore maturation.

Timothy D Craggs1.   

Abstract

The prolific use of green fluorescent protein and its variants throughout cellular biology relies on the post-translational formation of the chromophore, which proceeds without the need for any additional enzymes or cofactors, except molecular oxygen. In order to form the mature chromophore, the polypeptide backbone must undergo four distinct processes: folding, cyclisation, oxidation and dehydration. This tutorial review looks in detail at the proposed mechanisms for chromophore formation arising out of experimental and computational studies. The folding process is discussed, and the role that the native state plays in catalysing the initial cyclisation and subsequent chemistry is analysed. The specific functions of four conserved residues (Y66, G67, R96 and E222) in the maturation process are also presented. A greater understanding of the maturation process of fluorescent proteins from both jellyfish and coral species will profit the ongoing quest for brighter, faster maturing, genetically-encodable fluorescent probes of all colours, thus increasing their utility throughout the biomedical sciences.

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Year:  2009        PMID: 19771333     DOI: 10.1039/b903641p

Source DB:  PubMed          Journal:  Chem Soc Rev        ISSN: 0306-0012            Impact factor:   54.564


  61 in total

1.  Requirements for mouse mammary tumor virus Rem signal peptide processing and function.

Authors:  Hyewon Byun; Nimita Halani; Yongqiang Gou; Andrea K Nash; Mary M Lozano; Jaquelin P Dudley
Journal:  J Virol       Date:  2011-11-09       Impact factor: 5.103

2.  A rewired green fluorescent protein: folding and function in a nonsequential, noncircular GFP permutant.

Authors:  Philippa J Reeder; Yao-Ming Huang; Jonathan S Dordick; Christopher Bystroff
Journal:  Biochemistry       Date:  2010-12-03       Impact factor: 3.162

3.  Fluorescent protein barrel fluctuations and oxygen diffusion pathways in mCherry.

Authors:  Prem P Chapagain; Chola K Regmi; William Castillo
Journal:  J Chem Phys       Date:  2011-12-21       Impact factor: 3.488

4.  GFP tagging sheds light on protein translocation: implications for key methods in cell biology.

Authors:  Marcel Deponte
Journal:  Cell Mol Life Sci       Date:  2012-02-16       Impact factor: 9.261

5.  A new bright green-emitting fluorescent protein--engineered monomeric and dimeric forms.

Authors:  Robielyn P Ilagan; Elizabeth Rhoades; David F Gruber; Hung-Teh Kao; Vincent A Pieribone; Lynne Regan
Journal:  FEBS J       Date:  2010-03-18       Impact factor: 5.542

6.  Chromophore formation in DsRed occurs by a branched pathway.

Authors:  Rita L Strack; Daniel E Strongin; Laurens Mets; Benjamin S Glick; Robert J Keenan
Journal:  J Am Chem Soc       Date:  2010-06-23       Impact factor: 15.419

7.  Structure of the red fluorescent protein from a lancelet (Branchiostoma lanceolatum): a novel GYG chromophore covalently bound to a nearby tyrosine.

Authors:  Vladimir Z Pletnev; Nadya V Pletneva; Konstantin A Lukyanov; Ekaterina A Souslova; Arkady F Fradkov; Dmitry M Chudakov; Tatyana Chepurnykh; Ilia V Yampolsky; Alexander Wlodawer; Zbigniew Dauter; Sergei Pletnev
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-08-17

8.  Maximum Caliber Can Build and Infer Models of Oscillation in a Three-Gene Feedback Network.

Authors:  Taylor Firman; Anar Amgalan; Kingshuk Ghosh
Journal:  J Phys Chem B       Date:  2019-01-09       Impact factor: 2.991

9.  Measurement of Internal pH in Helicobacter pylori by Using Green Fluorescent Protein Fluorimetry.

Authors:  Yi Wen; David R Scott; Olga Vagin; Elmira Tokhtaeva; Elizabeth A Marcus; George Sachs
Journal:  J Bacteriol       Date:  2018-06-25       Impact factor: 3.490

10.  Structural Consequences of Chromophore Formation and Exploration of Conserved Lid Residues amongst Naturally Occurring Fluorescent Proteins.

Authors:  Matthew H Zimmer; Binsen Li; Ramza S Shahid; Paola Peshkepija; Marc Zimmer
Journal:  Chem Phys       Date:  2014-01-31       Impact factor: 2.348

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