Literature DB >> 12557193

Hydration in proteins observed by high-resolution neutron crystallography.

Toshiyuki Chatake1, Andreas Ostermann, Kazuo Kurihara, Fritz G Parak, Nobuo Niimura.   

Abstract

It is well known that water molecules surrounding a protein play important roles in maintaining its structural stability. Water molecules are known to participate in several physiological processes through the formation of hydrogen bonds. However, the hydration structures of most proteins are not known well at an atomic level at present because X-ray protein crystallography has difficulties to localize hydrogen atoms. In contrast, neutron crystallography has no problem in determining the position of hydrogens with high accuracy.1 In this article, the hydration structures of three proteins are described- myoglobin, wild-type rubredoxin, and a mutant rubredoxin-the structures of which were solved at 1.5- or 1.6-A resolution by neutron structure determination. These hydration patterns show fascinating features and the water molecules adopt a variety of shapes in the neutron Fourier maps, revealing details of intermolecular hydrogen bond formation and dynamics of hydration. Our results further show that there are strong relationships between these shapes and the water environments. Copyright 2003 Wiley-Liss, Inc.

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Year:  2003        PMID: 12557193     DOI: 10.1002/prot.10303

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  14 in total

1.  Neutron crystallographic study on rubredoxin from Pyrococcus furiosus by BIX-3, a single-crystal diffractometer for biomacromolecules.

Authors:  Kazuo Kurihara; Ichiro Tanaka; Toshiyuki Chatake; Michael W W Adams; Francis E Jenney; Natalia Moiseeva; Robert Bau; Nobuo Niimura
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-22       Impact factor: 11.205

2.  H-bonding in protein hydration revisited.

Authors:  Michael Petukhov; Georgy Rychkov; Leonid Firsov; Luis Serrano
Journal:  Protein Sci       Date:  2004-07-06       Impact factor: 6.725

3.  Joint X-ray and neutron refinement with phenix.refine.

Authors:  Pavel V Afonine; Marat Mustyakimov; Ralf W Grosse-Kunstleve; Nigel W Moriarty; Paul Langan; Paul D Adams
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-10-20

Review 4.  Neutron Laue macromolecular crystallography.

Authors:  Flora Meilleur; Dean A A Myles; Matthew P Blakeley
Journal:  Eur Biophys J       Date:  2006-08-03       Impact factor: 1.733

5.  A neutron crystallographic analysis of T6 porcine insulin at 2.1 A resolution.

Authors:  Wakari Iwai; Taro Yamada; Kazuo Kurihara; Yuki Ohnishi; Yoichiro Kobayashi; Ichiro Tanaka; Haruyuki Takahashi; Ryota Kuroki; Taro Tamada; Nobuo Niimura
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-09-16

6.  Structure of HIV-1 protease in complex with potent inhibitor KNI-272 determined by high-resolution X-ray and neutron crystallography.

Authors:  Motoyasu Adachi; Takashi Ohhara; Kazuo Kurihara; Taro Tamada; Eijiro Honjo; Nobuo Okazaki; Shigeki Arai; Yoshinari Shoyama; Kaname Kimura; Hiroyoshi Matsumura; Shigeru Sugiyama; Hiroaki Adachi; Kazufumi Takano; Yusuke Mori; Koushi Hidaka; Tooru Kimura; Yoshio Hayashi; Yoshiaki Kiso; Ryota Kuroki
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-09       Impact factor: 11.205

7.  Low-barrier hydrogen bond in photoactive yellow protein.

Authors:  Shigeo Yamaguchi; Hironari Kamikubo; Kazuo Kurihara; Ryota Kuroki; Nobuo Niimura; Nobutaka Shimizu; Yoichi Yamazaki; Mikio Kataoka
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-02       Impact factor: 11.205

8.  Water polygons in high-resolution protein crystal structures.

Authors:  Jonas Lee; Sung-Hou Kim
Journal:  Protein Sci       Date:  2009-07       Impact factor: 6.725

9.  Reintroducing electrostatics into macromolecular crystallographic refinement: application to neutron crystallography and DNA hydration.

Authors:  Timothy D Fenn; Michael J Schnieders; Marat Mustyakimov; Chuanjie Wu; Paul Langan; Vijay S Pande; Axel T Brunger
Journal:  Structure       Date:  2011-04-13       Impact factor: 5.006

10.  Complicated water orientations in the minor groove of the B-DNA decamer d(CCATTAATGG)2 observed by neutron diffraction measurements.

Authors:  Shigeki Arai; Toshiyuki Chatake; Takashi Ohhara; Kazuo Kurihara; Ichiro Tanaka; Nobuhiro Suzuki; Zui Fujimoto; Hiroshi Mizuno; Nobuo Niimura
Journal:  Nucleic Acids Res       Date:  2005-05-24       Impact factor: 16.971

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