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Literature DB >> 1976816

Nucleotide sequence of nine protein-coding genes and 22 tRNAs in the mitochondrial DNA of the sea star Pisaster ochraceus.

M J Smith¹, D K Banfield, K Doteval, S Gorski, D J Kowbel.

Abstract

We have cloned and sequenced over 9 kb of the mitochondrial genome from the sea star Pisaster ochraceus. Within a continuous 8.0-kb fragment are located the genes for NADH dehydrogenase subunits 1, 2, 3, and 4L (ND1, ND2, ND3, and ND4L), cytochrome oxidase subunits I, II, and III (COI, COII, and COIII), and adenosine triphosphatase subunits 6 and 8 (ATPase 6 and ATPase 8). This large fragment also contains a cluster of 13 tRNA genes between ND1 and COI as well as the genes for isoleucine tRNA between ND1 and ND2, arginine tRNA between COI and ND4L, lysine tRNA between COII and ATPase 8, and the serine (UCN) tRNA between COIII and ND3. The genes for the other five tRNAs lie outside this fragment. The gene for phenylalanine tRNA is located between cytochrome b and the 12S ribosomal genes. The genes for tRNA(glu) and tRNA(thr) are 3' to 12S ribosomal gene. The tRNAs for histidine and serine (AGN) are adjacent to each other and lie between ND4 and ND5. These data confirm the novel gene order in mitochondrial DNA (mtDNA) of sea stars and delineate additional distinctions between the sea star and other mtDNA molecules.

Entities: Chemical Disease Species

Mesh：

Substances：

Year: 1990 PMID： 1976816 DOI： 10.1007/bf02109496

Source DB: PubMed Journal: J Mol Evol ISSN： 0022-2844 Impact factor: 2.395

30 in total

1. Platyhelminth mitochondrial DNA: evidence for early evolutionary origin of a tRNA(serAGN) that contains a dihydrouridine arm replacement loop, and of serine-specifying AGA and AGG codons.

Authors: J R Garey; D R Wolstenholme
Journal: J Mol Evol Date: 1989-05 Impact factor: 2.395

2. Shifting constraints on tRNA genes during mitochondrial DNA evolution in animals.

Authors: W K Thomas; J Maa; A C Wilson
Journal: New Biol Date: 1989-10

3. Simultaneous editing of multiple nucleic acid and protein sequences with ESEE.

Authors: E L Cabot; A T Beckenbach
Journal: Comput Appl Biosci Date: 1989-07

4. Bizarre tRNAs inferred from DNA sequences of mitochondrial genomes of nematode worms.

Authors: D R Wolstenholme; J L Macfarlane; R Okimoto; D O Clary; J A Wahleithner
Journal: Proc Natl Acad Sci U S A Date: 1987-03 Impact factor: 11.205

5. Dideoxy sequencing method using denatured plasmid templates.

Authors: M Hattori; Y Sakaki
Journal: Anal Biochem Date: 1986-02-01 Impact factor: 3.365

6. A simple method for displaying the hydropathic character of a protein.

Authors: J Kyte; R F Doolittle
Journal: J Mol Biol Date: 1982-05-05 Impact factor: 5.469

7. Sequence and organization of the human mitochondrial genome.

Authors: S Anderson; A T Bankier; B G Barrell; M H de Bruijn; A R Coulson; J Drouin; I C Eperon; D P Nierlich; B A Roe; F Sanger; P H Schreier; A J Smith; R Staden; I G Young
Journal: Nature Date: 1981-04-09 Impact factor: 49.962

8. The complete nucleotide sequence of the Rattus norvegicus mitochondrial genome: cryptic signals revealed by comparative analysis between vertebrates.

Authors: G Gadaleta; G Pepe; G De Candia; C Quagliariello; E Sbisà; C Saccone
Journal: J Mol Evol Date: 1989-06 Impact factor: 2.395

9. Parallel origins of duplications and the formation of pseudogenes in mitochondrial DNA from parthenogenetic lizards (Heteronotia binoei; Gekkonidae).

Authors: C E Zevering; C Moritz; A Heideman; R A Sturm
Journal: J Mol Evol Date: 1991-11 Impact factor: 2.395

10. Complete mitochondrial genome of Benthodytes marianensis (Holothuroidea: Elasipodida: Psychropotidae): Insight into deep sea adaptation in the sea cucumber.

Authors: Wendan Mu; Jun Liu; Haibin Zhang
Journal: PLoS One Date: 2018-11-30 Impact factor: 3.240

Nucleotide sequence of nine protein-coding genes and 22 tRNAs in the mitochondrial DNA of the sea star Pisaster ochraceus.

1. Platyhelminth mitochondrial DNA: evidence for early evolutionary origin of a tRNA(serAGN) that contains a dihydrouridine arm replacement loop, and of serine-specifying AGA and AGG codons.

2. Shifting constraints on tRNA genes during mitochondrial DNA evolution in animals.

3. Simultaneous editing of multiple nucleic acid and protein sequences with ESEE.

4. Bizarre tRNAs inferred from DNA sequences of mitochondrial genomes of nematode worms.

5. Dideoxy sequencing method using denatured plasmid templates.

6. A simple method for displaying the hydropathic character of a protein.

7. Sequence and organization of the human mitochondrial genome.

8. The complete nucleotide sequence of the Rattus norvegicus mitochondrial genome: cryptic signals revealed by comparative analysis between vertebrates.

9. Duplication and remoulding of tRNA genes during the evolutionary rearrangement of mitochondrial genomes.

10. Gene arrangement in sea star mitochondrial DNA demonstrates a major inversion event during echinoderm evolution.

1. New nucleotide sequence data on the EMBL File Server.

Review 2. Recent evidence for evolution of the genetic code.

3. Gene order comparisons for phylogenetic inference: evolution of the mitochondrial genome.

Review 4. The evolutionary change of the genetic code as restricted by the anticodon and identity of transfer RNA.

5. A novel mitochondrial genome organization for the blue mussel, Mytilus edulis.

6. Partial mitochondrial DNA sequence of the crustacean Daphnia pulex.

7. The phylogeny of echinoderm classes based on mitochondrial gene arrangements.

8. Complete DNA sequence of the mitochondrial genome of the black chiton, Katharina tunicata.

9. Parallel origins of duplications and the formation of pseudogenes in mitochondrial DNA from parthenogenetic lizards (Heteronotia binoei; Gekkonidae).

10. Complete mitochondrial genome of Benthodytes marianensis (Holothuroidea: Elasipodida: Psychropotidae): Insight into deep sea adaptation in the sea cucumber.