Literature DB >> 1975792

A simple method for estimating average number of nucleotide substitutions within and between populations from restriction data.

M Nei1, J C Miller.   

Abstract

A simple method is proposed for estimating the average number of nucleotide substitutions per site within and between populations for the case where a large number of individuals are examined for many restriction enzymes. This method gives essentially the same results as those obtained by Nei and Li's method but saves a large amount of computer time. The variances of the quantities estimated can be obtained by the jackknife method, and these variances are very similar to those obtained by Nei and Jin's more sophisticated method. A similar method can also be applied to DNA sequence data.

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Year:  1990        PMID: 1975792      PMCID: PMC1204113     

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  9 in total

1.  A new estimate of sequence divergence of mitochondrial DNA using restriction endonuclease mappings.

Authors:  N Kaplan; C H Langley
Journal:  J Mol Evol       Date:  1979-11       Impact factor: 2.395

Review 2.  Inference of haplotypes from PCR-amplified samples of diploid populations.

Authors:  A G Clark
Journal:  Mol Biol Evol       Date:  1990-03       Impact factor: 16.240

3.  Variances of the average numbers of nucleotide substitutions within and between populations.

Authors:  M Nei; L Jin
Journal:  Mol Biol Evol       Date:  1989-05       Impact factor: 16.240

4.  Mathematical model for studying genetic variation in terms of restriction endonucleases.

Authors:  M Nei; W H Li
Journal:  Proc Natl Acad Sci U S A       Date:  1979-10       Impact factor: 11.205

5.  DNA polymorphism detectable by restriction endonucleases.

Authors:  M Nei; F Tajima
Journal:  Genetics       Date:  1981-01       Impact factor: 4.562

6.  Maximum likelihood estimation of the number of nucleotide substitutions from restriction sites data.

Authors:  M Nei; F Tajima
Journal:  Genetics       Date:  1983-09       Impact factor: 4.562

7.  Polymorphism in mitochondrial DNA of humans as revealed by restriction endonuclease analysis.

Authors:  W M Brown
Journal:  Proc Natl Acad Sci U S A       Date:  1980-06       Impact factor: 11.205

8.  Extensive polymorphism in the mitochondrial DNA of apes.

Authors:  S D Ferris; W M Brown; W S Davidson; A C Wilson
Journal:  Proc Natl Acad Sci U S A       Date:  1981-10       Impact factor: 11.205

9.  Evolutionary tree for apes and humans based on cleavage maps of mitochondrial DNA.

Authors:  S D Ferris; A C Wilson; W M Brown
Journal:  Proc Natl Acad Sci U S A       Date:  1981-04       Impact factor: 11.205

  9 in total
  52 in total

1.  Vicariance biogeography in the Pleistocene and speciation in North American wood warblers: a test of Mengel's model.

Authors:  E Bermingham; S Rohwer; S Freeman; C Wood
Journal:  Proc Natl Acad Sci U S A       Date:  1992-07-15       Impact factor: 11.205

2.  Sources and predictors of resolvable indel polymorphism assessed using rice as a model.

Authors:  J D Edwards; V M Lee; S R McCouch
Journal:  Mol Genet Genomics       Date:  2004-01-31       Impact factor: 3.291

3.  Identification of two distinct amplifications of the esterase B locus in Culex pipiens (L.) mosquitoes from Mediterranean countries.

Authors:  M Poirié; M Raymond; N Pasteur
Journal:  Biochem Genet       Date:  1992-02       Impact factor: 1.890

4.  A method for estimating nucleotide diversity from AFLP data.

Authors:  H Innan; R Terauchi; G Kahl; F Tajima
Journal:  Genetics       Date:  1999-03       Impact factor: 4.562

5.  Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data.

Authors:  L Excoffier; P E Smouse; J M Quattro
Journal:  Genetics       Date:  1992-06       Impact factor: 4.562

6.  Hierarchical analysis of nucleotide diversity in geographically structured populations.

Authors:  K E Holsinger; R J Mason-Gamer
Journal:  Genetics       Date:  1996-02       Impact factor: 4.562

7.  mtDNA polymorphism in East Asian Populations, with special reference to the peopling of Japan.

Authors:  S Horai; K Murayama; K Hayasaka; S Matsubayashi; Y Hattori; G Fucharoen; S Harihara; K S Park; K Omoto; I H Pan
Journal:  Am J Hum Genet       Date:  1996-09       Impact factor: 11.025

8.  The genetic relationship between the Finns and the Finnish Saami (Lapps): analysis of nuclear DNA and mtDNA.

Authors:  P Lahermo; A Sajantila; P Sistonen; M Lukka; P Aula; L Peltonen; M L Savontaus
Journal:  Am J Hum Genet       Date:  1996-06       Impact factor: 11.025

9.  Genetic characterization of populations of a de novo arisen sugar beet pest, Aubeonymus mariaefranciscae (Coleoptera, Curculionidae), by RAPD analysis.

Authors:  A Taberner; J Dopazo; P Castañera
Journal:  J Mol Evol       Date:  1997-07       Impact factor: 2.395

10.  Molecular evolutionary relationships of enteroinvasive Escherichia coli and Shigella spp.

Authors:  Ruiting Lan; M Chehani Alles; Kathy Donohoe; Marina B Martinez; Peter R Reeves
Journal:  Infect Immun       Date:  2004-09       Impact factor: 3.441

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