Literature DB >> 19757799

Protein tertiary structural changes visualized by time-resolved X-ray solution scattering.

Sena Ahn, Kyung Hwan Kim, Youngmin Kim, Jeongho Kim, Hyotcherl Ihee.   

Abstract

We obtained a solution structural model of myoglobin (Mb) formed upon the CO photolysis of MbCO by analyzing time-resolved X-ray solution scattering data. An experiment-restrained rigid-body molecular dynamics simulation was used to find the best model whose theoretical difference scattering curve gives a satisfactory agreement with the experimental data at the time delay of 10 ns. The obtained solution model shows structural changes similar to crystallographic models for MbCO --> Mb but also displays a noticeable difference in that the N-terminus and F helix show larger structural changes.

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Year:  2009        PMID: 19757799     DOI: 10.1021/jp906983v

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  22 in total

1.  Rapid readout detector captures protein time-resolved WAXS.

Authors:  Sebastian Westenhoff; Erik Malmerberg; David Arnlund; Linda Johansson; Elena Nazarenko; Marco Cammarata; Jan Davidsson; Vincent Chaptal; Jeff Abramson; Gergely Katona; Andreas Menzel; Richard Neutze
Journal:  Nat Methods       Date:  2010-09-29       Impact factor: 28.547

2.  Time-resolved WAXS reveals accelerated conformational changes in iodoretinal-substituted proteorhodopsin.

Authors:  Erik Malmerberg; Ziad Omran; Jochen S Hub; Xuewen Li; Gergely Katona; Sebastian Westenhoff; Linda C Johansson; Magnus Andersson; Marco Cammarata; Michael Wulff; David van der Spoel; Jan Davidsson; Alexandre Specht; Richard Neutze
Journal:  Biophys J       Date:  2011-09-20       Impact factor: 4.033

3.  Validating solution ensembles from molecular dynamics simulation by wide-angle X-ray scattering data.

Authors:  Po-Chia Chen; Jochen S Hub
Journal:  Biophys J       Date:  2014-07-15       Impact factor: 4.033

4.  Ultrafast anisotropic protein quake propagation after CO photodissociation in myoglobin.

Authors:  Levin U L Brinkmann; Jochen S Hub
Journal:  Proc Natl Acad Sci U S A       Date:  2016-09-06       Impact factor: 11.205

Review 5.  Time-resolved structural studies at synchrotrons and X-ray free electron lasers: opportunities and challenges.

Authors:  Richard Neutze; Keith Moffat
Journal:  Curr Opin Struct Biol       Date:  2012-09-25       Impact factor: 6.809

6.  Integrating solvation shell structure in experimentally driven molecular dynamics using x-ray solution scattering data.

Authors:  Darren J Hsu; Denis Leshchev; Irina Kosheleva; Kevin L Kohlstedt; Lin X Chen
Journal:  J Chem Phys       Date:  2020-05-29       Impact factor: 3.488

7.  Anisotropic Picosecond X-ray Solution Scattering from Photo-selectively Aligned Protein Molecules.

Authors:  Jeongho Kim; Kyung Hwan Kim; Jong Goo Kim; Tae Wu Kim; Youngmin Kim; Hyotcherl Ihee
Journal:  J Phys Chem Lett       Date:  2011-02-02       Impact factor: 6.475

8.  Direct observation of myoglobin structural dynamics from 100 picoseconds to 1 microsecond with picosecond X-ray solution scattering.

Authors:  Kyung Hwan Kim; Key Young Oang; Jeongho Kim; Jae Hyuk Lee; Youngmin Kim; Hyotcherl Ihee
Journal:  Chem Commun (Camb)       Date:  2010-08-24       Impact factor: 6.222

9.  Time-resolved structural studies of protein reaction dynamics: a smorgasbord of X-ray approaches.

Authors:  Sebastian Westenhoff; Elena Nazarenko; Erik Malmerberg; Jan Davidsson; Gergely Katona; Richard Neutze
Journal:  Acta Crystallogr A       Date:  2010-02-18       Impact factor: 2.290

10.  Visualizing a protein quake with time-resolved X-ray scattering at a free-electron laser.

Authors:  David Arnlund; Linda C Johansson; Cecilia Wickstrand; Anton Barty; Garth J Williams; Erik Malmerberg; Jan Davidsson; Despina Milathianaki; Daniel P DePonte; Robert L Shoeman; Dingjie Wang; Daniel James; Gergely Katona; Sebastian Westenhoff; Thomas A White; Andrew Aquila; Sadia Bari; Peter Berntsen; Mike Bogan; Tim Brandt van Driel; R Bruce Doak; Kasper Skov Kjær; Matthias Frank; Raimund Fromme; Ingo Grotjohann; Robert Henning; Mark S Hunter; Richard A Kirian; Irina Kosheleva; Christopher Kupitz; Mengning Liang; Andrew V Martin; Martin Meedom Nielsen; Marc Messerschmidt; M Marvin Seibert; Jennie Sjöhamn; Francesco Stellato; Uwe Weierstall; Nadia A Zatsepin; John C H Spence; Petra Fromme; Ilme Schlichting; Sébastien Boutet; Gerrit Groenhof; Henry N Chapman; Richard Neutze
Journal:  Nat Methods       Date:  2014-08-10       Impact factor: 28.547

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