Literature DB >> 19754161

Analytical error reduction using single point calibration for accurate and precise metabolomic phenotyping.

Frans M van der Kloet1, Ivana Bobeldijk, Elwin R Verheij, Renger H Jellema.   

Abstract

Analytical errors caused by suboptimal performance of the chosen platform for a number of metabolites and instrumental drift are a major issue in large-scale metabolomics studies. Especially for MS-based methods, which are gaining common ground within metabolomics, it is difficult to control the analytical data quality without the availability of suitable labeled internal standards and calibration standards even within one laboratory. In this paper, we suggest a workflow for significant reduction of the analytical error using pooled calibration samples and multiple internal standard strategy. Between and within batch calibration techniques are applied and the analytical error is reduced significantly (increase of 25% of peaks with RSD lower than 20%) and does not hamper or interfere with statistical analysis of the final data.

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Year:  2009        PMID: 19754161     DOI: 10.1021/pr900499r

Source DB:  PubMed          Journal:  J Proteome Res        ISSN: 1535-3893            Impact factor:   4.466


  81 in total

1.  Evaluation of normalization methods to pave the way towards large-scale LC-MS-based metabolomics profiling experiments.

Authors:  Bedilu Alamirie Ejigu; Dirk Valkenborg; Geert Baggerman; Manu Vanaerschot; Erwin Witters; Jean-Claude Dujardin; Tomasz Burzykowski; Maya Berg
Journal:  OMICS       Date:  2013-06-29

2.  Birth weight affects body protein retention but not nitrogen efficiency in the later life of pigs.

Authors:  Carola M C van der Peet-Schwering; Lisanne M G Verschuren; Mette S Hedemann; Gisabeth P Binnendijk; Alfons J M Jansman
Journal:  J Anim Sci       Date:  2020-06-01       Impact factor: 3.159

3.  Metabolite Signatures of Metabolic Risk Factors and their Longitudinal Changes.

Authors:  Xiaoyan Yin; Subha Subramanian; Christine M Willinger; George Chen; Peter Juhasz; Paul Courchesne; Brian H Chen; Xiaohang Li; Shih-Jen Hwang; Caroline S Fox; Christopher J O'Donnell; Pieter Muntendam; Valentin Fuster; Ivana Bobeldijk-Pastorova; Silvia C Sookoian; Carlos J Pirola; Neal Gordon; Aram Adourian; Martin G Larson; Daniel Levy
Journal:  J Clin Endocrinol Metab       Date:  2016-02-23       Impact factor: 5.958

4.  Procedures for large-scale metabolic profiling of serum and plasma using gas chromatography and liquid chromatography coupled to mass spectrometry.

Authors:  Warwick B Dunn; David Broadhurst; Paul Begley; Eva Zelena; Sue Francis-McIntyre; Nadine Anderson; Marie Brown; Joshau D Knowles; Antony Halsall; John N Haselden; Andrew W Nicholls; Ian D Wilson; Douglas B Kell; Royston Goodacre
Journal:  Nat Protoc       Date:  2011-06-30       Impact factor: 13.491

5.  Obesity-dependent metabolic signatures associated with nonalcoholic fatty liver disease progression.

Authors:  J Barr; J Caballería; I Martínez-Arranz; A Domínguez-Díez; C Alonso; J Muntané; M Pérez-Cormenzana; C García-Monzón; R Mayo; A Martín-Duce; M Romero-Gómez; O Lo Iacono; J Tordjman; R J Andrade; M Pérez-Carreras; Y Le Marchand-Brustel; A Tran; C Fernández-Escalante; E Arévalo; M García-Unzueta; K Clement; J Crespo; P Gual; M Gómez-Fleitas; M L Martínez-Chantar; A Castro; S C Lu; M Vázquez-Chantada; J M Mato
Journal:  J Proteome Res       Date:  2012-03-15       Impact factor: 4.466

Review 6.  The use of mass spectrometry for analysing metabolite biomarkers in epidemiology: methodological and statistical considerations for application to large numbers of biological samples.

Authors:  Mads V Lind; Otto I Savolainen; Alastair B Ross
Journal:  Eur J Epidemiol       Date:  2016-05-26       Impact factor: 8.082

7.  Evaluation of intensity drift correction strategies using MetaboDrift, a normalization tool for multi-batch metabolomics data.

Authors:  Chanisa Thonusin; Heidi B IglayReger; Tanu Soni; Amy E Rothberg; Charles F Burant; Charles R Evans
Journal:  J Chromatogr A       Date:  2017-09-09       Impact factor: 4.759

8.  Quantitative profiling of endocannabinoids and related N-acylethanolamines in human CSF using nano LC-MS/MS.

Authors:  Vasudev Kantae; Shinji Ogino; Marek Noga; Amy C Harms; Robin M van Dongen; Gerrit L J Onderwater; Arn M J M van den Maagdenberg; Gisela M Terwindt; Mario van der Stelt; Michel D Ferrari; Thomas Hankemeier
Journal:  J Lipid Res       Date:  2016-12-20       Impact factor: 5.922

9.  High-melting lipid mixtures and the origin of detergent-resistant membranes studied with temperature-solubilization diagrams.

Authors:  Jesús Sot; Marco M Manni; Ana R Viguera; Verónica Castañeda; Ainara Cano; Cristina Alonso; David Gil; Mikel Valle; Alicia Alonso; Félix M Goñi
Journal:  Biophys J       Date:  2014-12-16       Impact factor: 4.033

10.  Sperm lipidic profiles differ significantly between ejaculates resulting in pregnancy or not following intracytoplasmic sperm injection.

Authors:  Rocio Rivera-Egea; Nicolas Garrido; Nerea Sota; Marcos Meseguer; Jose Remohí; Francisco Dominguez
Journal:  J Assist Reprod Genet       Date:  2018-08-14       Impact factor: 3.412

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