Literature DB >> 19750511

An improved strategy for tandem affinity purification-tagging of Schizosaccharomyces pombe genes.

Lubos Cipak1, Mario Spirek, Maria Novatchkova, Zhiming Chen, Cornelia Rumpf, Wolfgang Lugmayr, Karl Mechtler, Gustav Ammerer, Edina Csaszar, Juraj Gregan.   

Abstract

Tandem affinity purification (TAP) is a method that allows rapid purification of native protein complexes. We developed an improved technique to fuse the fission yeast genes with a TAP tag. Our technique is based on tagging constructs that contain regions homologous to the target gene cloned into vectors carrying a TAP tag. We used this technique to design strategies for TAP-tagging of predicted Schizosaccharomyces pombe genes (http://mendel.imp.ac.at/Pombe_tagging/). To validate the approach, we purified the proteins, which associated with two evolutionarily conserved proteins Swi5 and Sfr1 as well as three protein kinases Ksg1, Orb6 and Sid1.

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Year:  2009        PMID: 19750511      PMCID: PMC2956173          DOI: 10.1002/pmic.200800948

Source DB:  PubMed          Journal:  Proteomics        ISSN: 1615-9853            Impact factor:   3.984


  27 in total

1.  Essential role of MCM proteins in premeiotic DNA replication.

Authors:  Karola Lindner; Juraj Gregán; Stuart Montgomery; Stephen E Kearsey
Journal:  Mol Biol Cell       Date:  2002-02       Impact factor: 4.138

2.  Two different Swi5-containing protein complexes are involved in mating-type switching and recombination repair in fission yeast.

Authors:  Yufuko Akamatsu; Dorota Dziadkowiec; Mitsunori Ikeguchi; Hideo Shinagawa; Hiroshi Iwasaki
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-08       Impact factor: 11.205

3.  GeneDB: a resource for prokaryotic and eukaryotic organisms.

Authors:  Christiane Hertz-Fowler; Chris S Peacock; Valerie Wood; Martin Aslett; Arnaud Kerhornou; Paul Mooney; Adrian Tivey; Matthew Berriman; Neil Hall; Kim Rutherford; Julian Parkhill; Alasdair C Ivens; Marie-Adele Rajandream; Bart Barrell
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

Review 4.  Genome-wide studies of protein-protein interaction.

Authors:  Joël Janin; Bertrand Séraphin
Journal:  Curr Opin Struct Biol       Date:  2003-06       Impact factor: 6.809

Review 5.  Molecular mechanisms of mammalian global genome nucleotide excision repair.

Authors:  Ludovic C J Gillet; Orlando D Schärer
Journal:  Chem Rev       Date:  2006-02       Impact factor: 60.622

6.  A large-scale screen in S. pombe identifies seven novel genes required for critical meiotic events.

Authors:  Cristina Martín-Castellanos; Miguel Blanco; Ana E Rozalén; Livia Pérez-Hidalgo; Ana I García; Francisco Conde; Juan Mata; Chad Ellermeier; Luther Davis; Pedro San-Segundo; Gerald R Smith; Sergio Moreno
Journal:  Curr Biol       Date:  2005-11-22       Impact factor: 10.834

7.  The Swi5-Sfr1 complex stimulates Rhp51/Rad51- and Dmc1-mediated DNA strand exchange in vitro.

Authors:  Nami Haruta; Yumiko Kurokawa; Yasuto Murayama; Yufuko Akamatsu; Satoru Unzai; Yasuhiro Tsutsui; Hiroshi Iwasaki
Journal:  Nat Struct Mol Biol       Date:  2006-08-20       Impact factor: 15.369

8.  Schizosaccharomyces pombe essential genes: a pilot study.

Authors:  Anabelle Decottignies; Isabel Sanchez-Perez; Paul Nurse
Journal:  Genome Res       Date:  2003-03       Impact factor: 9.043

9.  Tandem affinity purification and identification of protein complex components.

Authors:  Kathleen L Gould; Liping Ren; Anna S Feoktistova; Jennifer L Jennings; Andrew J Link
Journal:  Methods       Date:  2004-07       Impact factor: 3.608

10.  Simplified primer design for PCR-based gene targeting and microarray primer database: two web tools for fission yeast.

Authors:  Christopher J Penkett; Zoë E Birtle; Jürg Bähler
Journal:  Yeast       Date:  2006-10-15       Impact factor: 3.239

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  16 in total

1.  High-throughput knockout screen in Schizosaccharomyces pombe identifies a novel gene required for efficient homolog disjunction during meiosis I.

Authors:  Cornelia Rumpf; Lubos Cipak; Maria Novatchkova; Zhang Li; Silvia Polakova; Andrej Dudas; Ines Kovacikova; Eva Miadokova; Gustav Ammerer; Juraj Gregan
Journal:  Cell Cycle       Date:  2010-05-15       Impact factor: 4.534

2.  Laser microsurgery provides evidence for merotelic kinetochore attachments in fission yeast cells lacking Pcs1 or Clr4.

Authors:  Cornelia Rumpf; Lubos Cipak; Alexander Schleiffer; Alison Pidoux; Karl Mechtler; Iva M Tolić-Nørrelykke; Juraj Gregan
Journal:  Cell Cycle       Date:  2010-10-03       Impact factor: 4.534

3.  Defining the budding yeast chromatin-associated interactome.

Authors:  Jean-Philippe Lambert; Jeffrey Fillingham; Mojgan Siahbazi; Jack Greenblatt; Kristin Baetz; Daniel Figeys
Journal:  Mol Syst Biol       Date:  2010-12-21       Impact factor: 11.429

4.  Casein Kinase 1 and Phosphorylation of Cohesin Subunit Rec11 (SA3) Promote Meiotic Recombination through Linear Element Formation.

Authors:  Naina Phadnis; Lubos Cipak; Silvia Polakova; Randy W Hyppa; Ingrid Cipakova; Dorothea Anrather; Lucia Karvaiova; Karl Mechtler; Gerald R Smith; Juraj Gregan
Journal:  PLoS Genet       Date:  2015-05-20       Impact factor: 5.917

5.  Identification of Novel Proteins Co-Purifying with Cockayne Syndrome Group B (CSB) Reveals Potential Roles for CSB in RNA Metabolism and Chromatin Dynamics.

Authors:  Serena Nicolai; Silvia Filippi; Manuela Caputo; Lubos Cipak; Juraj Gregan; Gustav Ammerer; Mattia Frontini; Daniela Willems; Giorgio Prantera; Adayabalam S Balajee; Luca Proietti-De-Santis
Journal:  PLoS One       Date:  2015-06-01       Impact factor: 3.240

6.  The spliceosome-associated protein Nrl1 suppresses homologous recombination-dependent R-loop formation in fission yeast.

Authors:  Lucia Aronica; Torben Kasparek; David Ruchman; Yamile Marquez; Lubos Cipak; Ingrid Cipakova; Dorothea Anrather; Barbora Mikolaskova; Maximilian Radtke; Sovan Sarkar; Chen-Chun Pai; Elizabeth Blaikley; Carol Walker; Kuo-Fang Shen; Renee Schroeder; Andrea Barta; Susan L Forsburg; Timothy C Humphrey
Journal:  Nucleic Acids Res       Date:  2015-12-17       Impact factor: 16.971

Review 7.  The differentiated and conserved roles of Swi5-Sfr1 in homologous recombination.

Authors:  Bilge Argunhan; Yasuto Murayama; Hiroshi Iwasaki
Journal:  FEBS Lett       Date:  2017-05-08       Impact factor: 4.124

8.  The Schizosaccharomyces pombe PPR protein Ppr10 associates with a novel protein Mpa1 and acts as a mitochondrial translational activator.

Authors:  Yirong Wang; Jianhua Yan; Qingzhen Zhang; Xuting Ma; Juan Zhang; Minghui Su; Xiaojun Wang; Ying Huang
Journal:  Nucleic Acids Res       Date:  2017-04-07       Impact factor: 16.971

9.  Crosstalk between casein kinase II and Ste20-related kinase Nak1.

Authors:  Lubos Cipak; Sneha Gupta; Iva Rajovic; Quan-Wen Jin; Dorothea Anrather; Gustav Ammerer; Dannel McCollum; Juraj Gregan
Journal:  Cell Cycle       Date:  2013-03-05       Impact factor: 4.534

10.  The cockayne syndrome B protein is essential for neuronal differentiation and neuritogenesis.

Authors:  F Ciaffardini; S Nicolai; M Caputo; G Canu; E Paccosi; M Costantino; M Frontini; A S Balajee; L Proietti-De-Santis
Journal:  Cell Death Dis       Date:  2014-05-29       Impact factor: 8.469

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