Literature DB >> 12831891

Genome-wide studies of protein-protein interaction.

Joël Janin1, Bertrand Séraphin.   

Abstract

Recent large-scale studies of protein complexes in yeast have demonstrated that the wide majority of proteins exist in the cell as parts of multicomponent assemblies, mostly novel and of unknown function. The structural and functional analysis of these complexes should be a priority for structural biologists in coming years. In silico methods such as docking simulations, which may contribute to this analysis, are being tested in the CAPRI community-wide experiment, which assesses blind predictions of the structure of protein-protein complexes.

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Year:  2003        PMID: 12831891     DOI: 10.1016/s0959-440x(03)00064-2

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  10 in total

1.  An accurate, residue-level, pair potential of mean force for folding and binding based on the distance-scaled, ideal-gas reference state.

Authors:  Chi Zhang; Song Liu; Hongyi Zhou; Yaoqi Zhou
Journal:  Protein Sci       Date:  2004-02       Impact factor: 6.725

2.  Computational approaches to protein-protein interaction.

Authors:  Giacomo Franzot; Oliviero Carugo
Journal:  J Struct Funct Genomics       Date:  2003

Review 3.  Protease signalling: the cutting edge.

Authors:  Boris Turk; Dušan Turk; Vito Turk
Journal:  EMBO J       Date:  2012-02-24       Impact factor: 11.598

4.  A de novo designed protein protein interface.

Authors:  Po-Ssu Huang; John J Love; Stephen L Mayo
Journal:  Protein Sci       Date:  2007-12       Impact factor: 6.725

5.  An improved strategy for tandem affinity purification-tagging of Schizosaccharomyces pombe genes.

Authors:  Lubos Cipak; Mario Spirek; Maria Novatchkova; Zhiming Chen; Cornelia Rumpf; Wolfgang Lugmayr; Karl Mechtler; Gustav Ammerer; Edina Csaszar; Juraj Gregan
Journal:  Proteomics       Date:  2009-10       Impact factor: 3.984

6.  A simple reference state makes a significant improvement in near-native selections from structurally refined docking decoys.

Authors:  Shide Liang; Song Liu; Chi Zhang; Yaoqi Zhou
Journal:  Proteins       Date:  2007-11-01

Review 7.  The MultiBac Baculovirus/Insect Cell Expression Vector System for Producing Complex Protein Biologics.

Authors:  Duygu Sari; Kapil Gupta; Deepak Balaji Thimiri Govinda Raj; Alice Aubert; Petra Drncová; Frederic Garzoni; Daniel Fitzgerald; Imre Berger
Journal:  Adv Exp Med Biol       Date:  2016       Impact factor: 2.622

8.  Protein-ligand binding region prediction (PLB-SAVE) based on geometric features and CUDA acceleration.

Authors:  Ying-Tsang Lo; Hsin-Wei Wang; Tun-Wen Pai; Wen-Shoung Tzou; Hui-Huang Hsu; Hao-Teng Chang
Journal:  BMC Bioinformatics       Date:  2013-03-08       Impact factor: 3.169

9.  Identification of Peptide Inhibitors of Enveloped Viruses Using Support Vector Machine.

Authors:  Yongtao Xu; Shui Yu; Jian-Wei Zou; Guixiang Hu; Noorsaadah A B D Rahman; Rozana Binti Othman; Xia Tao; Meilan Huang
Journal:  PLoS One       Date:  2015-12-04       Impact factor: 3.240

Review 10.  Cellular models of Batten disease.

Authors:  Christopher J Minnis; Christopher D Thornton; Lorna M FitzPatrick; Tristan R McKay
Journal:  Biochim Biophys Acta Mol Basis Dis       Date:  2019-10-23       Impact factor: 5.187

  10 in total

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