Literature DB >> 14681429

GeneDB: a resource for prokaryotic and eukaryotic organisms.

Christiane Hertz-Fowler1, Chris S Peacock, Valerie Wood, Martin Aslett, Arnaud Kerhornou, Paul Mooney, Adrian Tivey, Matthew Berriman, Neil Hall, Kim Rutherford, Julian Parkhill, Alasdair C Ivens, Marie-Adele Rajandream, Bart Barrell.   

Abstract

GeneDB (http://www.genedb.org/) is a genome database for prokaryotic and eukaryotic organisms. The resource provides a portal through which data generated by the Pathogen Sequencing Unit at the Wellcome Trust Sanger Institute and other collaborating sequencing centres can be made publicly available. It combines data from finished and ongoing genome and expressed sequence tag (EST) projects with curated annotation, that can be searched, sorted and downloaded, using a single web based resource. The current release stores 11 datasets of which six are curated and maintained by biologists, who review and incorporate information from the scientific literature, public databases and the respective research communities.

Mesh:

Year:  2004        PMID: 14681429      PMCID: PMC308742          DOI: 10.1093/nar/gkh007

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  17 in total

1.  Artemis: sequence visualization and annotation.

Authors:  K Rutherford; J Parkhill; J Crook; T Horsnell; P Rice; M A Rajandream; B Barrell
Journal:  Bioinformatics       Date:  2000-10       Impact factor: 6.937

2.  The KEGG databases at GenomeNet.

Authors:  Minoru Kanehisa; Susumu Goto; Shuichi Kawashima; Akihiro Nakaya
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

3.  The InterPro Database, 2003 brings increased coverage and new features.

Authors:  Nicola J Mulder; Rolf Apweiler; Teresa K Attwood; Amos Bairoch; Daniel Barrell; Alex Bateman; David Binns; Margaret Biswas; Paul Bradley; Peer Bork; Phillip Bucher; Richard R Copley; Emmanuel Courcelle; Ujjwal Das; Richard Durbin; Laurent Falquet; Wolfgang Fleischmann; Sam Griffiths-Jones; Daniel Haft; Nicola Harte; Nicolas Hulo; Daniel Kahn; Alexander Kanapin; Maria Krestyaninova; Rodrigo Lopez; Ivica Letunic; David Lonsdale; Ville Silventoinen; Sandra E Orchard; Marco Pagni; David Peyruc; Chris P Ponting; Jeremy D Selengut; Florence Servant; Christian J A Sigrist; Robert Vaughan; Evgueni M Zdobnov
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

4.  The EMBL Nucleotide Sequence Database: major new developments.

Authors:  Guenter Stoesser; Wendy Baker; Alexandra van den Broek; Maria Garcia-Pastor; Carola Kanz; Tamara Kulikova; Rasko Leinonen; Quan Lin; Vincent Lombard; Rodrigo Lopez; Renato Mancuso; Francesco Nardone; Peter Stoehr; Mary Ann Tuli; Katerina Tzouvara; Robert Vaughan
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

5.  Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18.

Authors:  J Parkhill; G Dougan; K D James; N R Thomson; D Pickard; J Wain; C Churcher; K L Mungall; S D Bentley; M T Holden; M Sebaihia; S Baker; D Basham; K Brooks; T Chillingworth; P Connerton; A Cronin; P Davis; R M Davies; L Dowd; N White; J Farrar; T Feltwell; N Hamlin; A Haque; T T Hien; S Holroyd; K Jagels; A Krogh; T S Larsen; S Leather; S Moule; P O'Gaora; C Parry; M Quail; K Rutherford; M Simmonds; J Skelton; K Stevens; S Whitehead; B G Barrell
Journal:  Nature       Date:  2001-10-25       Impact factor: 49.962

6.  The genome sequence of Schizosaccharomyces pombe.

Authors:  V Wood; R Gwilliam; M-A Rajandream; M Lyne; R Lyne; A Stewart; J Sgouros; N Peat; J Hayles; S Baker; D Basham; S Bowman; K Brooks; D Brown; S Brown; T Chillingworth; C Churcher; M Collins; R Connor; A Cronin; P Davis; T Feltwell; A Fraser; S Gentles; A Goble; N Hamlin; D Harris; J Hidalgo; G Hodgson; S Holroyd; T Hornsby; S Howarth; E J Huckle; S Hunt; K Jagels; K James; L Jones; M Jones; S Leather; S McDonald; J McLean; P Mooney; S Moule; K Mungall; L Murphy; D Niblett; C Odell; K Oliver; S O'Neil; D Pearson; M A Quail; E Rabbinowitsch; K Rutherford; S Rutter; D Saunders; K Seeger; S Sharp; J Skelton; M Simmonds; R Squares; S Squares; K Stevens; K Taylor; R G Taylor; A Tivey; S Walsh; T Warren; S Whitehead; J Woodward; G Volckaert; R Aert; J Robben; B Grymonprez; I Weltjens; E Vanstreels; M Rieger; M Schäfer; S Müller-Auer; C Gabel; M Fuchs; A Düsterhöft; C Fritzc; E Holzer; D Moestl; H Hilbert; K Borzym; I Langer; A Beck; H Lehrach; R Reinhardt; T M Pohl; P Eger; W Zimmermann; H Wedler; R Wambutt; B Purnelle; A Goffeau; E Cadieu; S Dréano; S Gloux; V Lelaure; S Mottier; F Galibert; S J Aves; Z Xiang; C Hunt; K Moore; S M Hurst; M Lucas; M Rochet; C Gaillardin; V A Tallada; A Garzon; G Thode; R R Daga; L Cruzado; J Jimenez; M Sánchez; F del Rey; J Benito; A Domínguez; J L Revuelta; S Moreno; J Armstrong; S L Forsburg; L Cerutti; T Lowe; W R McCombie; I Paulsen; J Potashkin; G V Shpakovski; D Ussery; B G Barrell; P Nurse; L Cerrutti
Journal:  Nature       Date:  2002-02-21       Impact factor: 49.962

7.  PlasmoDB: the Plasmodium genome resource. A database integrating experimental and computational data.

Authors:  Amit Bahl; Brian Brunk; Jonathan Crabtree; Martin J Fraunholz; Bindu Gajria; Gregory R Grant; Hagai Ginsburg; Dinesh Gupta; Jessica C Kissinger; Philip Labo; Li Li; Matthew D Mailman; Arthur J Milgram; David S Pearson; David S Roos; Jonathan Schug; Christian J Stoeckert; Patricia Whetzel
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

8.  Saccharomyces Genome Database (SGD) provides biochemical and structural information for budding yeast proteins.

Authors:  Shuai Weng; Qing Dong; Rama Balakrishnan; Karen Christie; Maria Costanzo; Kara Dolinski; Selina S Dwight; Stacia Engel; Dianna G Fisk; Eurie Hong; Laurie Issel-Tarver; Anand Sethuraman; Chandra Theesfeld; Rey Andrada; Gail Binkley; Christopher Lane; Mark Schroeder; David Botstein; J Michael Cherry
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

9.  Genome sequence of the human malaria parasite Plasmodium falciparum.

Authors:  Malcolm J Gardner; Neil Hall; Eula Fung; Owen White; Matthew Berriman; Richard W Hyman; Jane M Carlton; Arnab Pain; Karen E Nelson; Sharen Bowman; Ian T Paulsen; Keith James; Jonathan A Eisen; Kim Rutherford; Steven L Salzberg; Alister Craig; Sue Kyes; Man-Suen Chan; Vishvanath Nene; Shamira J Shallom; Bernard Suh; Jeremy Peterson; Sam Angiuoli; Mihaela Pertea; Jonathan Allen; Jeremy Selengut; Daniel Haft; Michael W Mather; Akhil B Vaidya; David M A Martin; Alan H Fairlamb; Martin J Fraunholz; David S Roos; Stuart A Ralph; Geoffrey I McFadden; Leda M Cummings; G Mani Subramanian; Chris Mungall; J Craig Venter; Daniel J Carucci; Stephen L Hoffman; Chris Newbold; Ronald W Davis; Claire M Fraser; Bart Barrell
Journal:  Nature       Date:  2002-10-03       Impact factor: 49.962

10.  The Pfam protein families database.

Authors:  Alex Bateman; Ewan Birney; Lorenzo Cerruti; Richard Durbin; Laurence Etwiller; Sean R Eddy; Sam Griffiths-Jones; Kevin L Howe; Mhairi Marshall; Erik L L Sonnhammer
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

View more
  125 in total

1.  Augmented annotation of the Schizosaccharomyces pombe genome reveals additional genes required for growth and viability.

Authors:  Danny A Bitton; Valerie Wood; Paul J Scutt; Agnes Grallert; Tim Yates; Duncan L Smith; Iain M Hagan; Crispin J Miller
Journal:  Genetics       Date:  2011-01-26       Impact factor: 4.562

2.  Variable numbers of tandem repeats in Plasmodium falciparum genes.

Authors:  John C Tan; Asako Tan; Lisa Checkley; Caroline M Honsa; Michael T Ferdig
Journal:  J Mol Evol       Date:  2010-08-22       Impact factor: 2.395

3.  Cross-species Functionome analysis identifies proteins associated with DNA repair, translation and aerobic respiration as conserved modulators of UV-toxicity.

Authors:  John P Rooney; Ashish Patil; Fraulin Joseph; Lauren Endres; Ulrike Begley; Maria R Zappala; Richard P Cunningham; Thomas J Begley
Journal:  Genomics       Date:  2010-12-30       Impact factor: 5.736

Review 4.  The central roles of telomeres and subtelomeres in antigenic variation in African trypanosomes.

Authors:  David Horn; J David Barry
Journal:  Chromosome Res       Date:  2005       Impact factor: 5.239

5.  Sm core variation in spliceosomal small nuclear ribonucleoproteins from Trypanosoma brucei.

Authors:  Pingping Wang; Zsofia Palfi; Christian Preusser; Stephan Lücke; William S Lane; Christian Kambach; Albrecht Bindereif
Journal:  EMBO J       Date:  2006-09-14       Impact factor: 11.598

6.  Multiplex analysis of RNA interference defects in Trypanosoma brucei.

Authors:  Sam Alsford; Lucy Glover; David Horn
Journal:  Mol Biochem Parasitol       Date:  2005-01       Impact factor: 1.759

7.  Mitochondrial origin-binding protein UMSBP mediates DNA replication and segregation in trypanosomes.

Authors:  Neta Milman; Shawn A Motyka; Paul T Englund; Derrick Robinson; Joseph Shlomai
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-28       Impact factor: 11.205

8.  Host pathogen protein interactions predicted by comparative modeling.

Authors:  Fred P Davis; David T Barkan; Narayanan Eswar; James H McKerrow; Andrej Sali
Journal:  Protein Sci       Date:  2007-10-26       Impact factor: 6.725

9.  Structure of Lmaj006129AAA, a hypothetical protein from Leishmania major.

Authors:  Tracy Arakaki; Isolde Le Trong; Eric Phizicky; Erin Quartley; George DeTitta; Joseph Luft; Angela Lauricella; Lori Anderson; Oleksandr Kalyuzhniy; Elizabeth Worthey; Peter J Myler; David Kim; David Baker; Wim G J Hol; Ethan A Merritt
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-02-24

10.  Protein geranylgeranyltransferase-I of Trypanosoma cruzi.

Authors:  Kohei Yokoyama; John R Gillespie; Wesley C Van Voorhis; Frederick S Buckner; Michael H Gelb
Journal:  Mol Biochem Parasitol       Date:  2007-10-02       Impact factor: 1.759

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.