Literature DB >> 17931570

Workflow based framework for life science informatics.

Abhishek Tiwari1, Arvind K T Sekhar.   

Abstract

Workflow technology is a generic mechanism to integrate diverse types of available resources (databases, servers, software applications and different services) which facilitate knowledge exchange within traditionally divergent fields such as molecular biology, clinical research, computational science, physics, chemistry and statistics. Researchers can easily incorporate and access diverse, distributed tools and data to develop their own research protocols for scientific analysis. Application of workflow technology has been reported in areas like drug discovery, genomics, large-scale gene expression analysis, proteomics, and system biology. In this article, we have discussed the existing workflow systems and the trends in applications of workflow based systems.

Mesh:

Year:  2007        PMID: 17931570     DOI: 10.1016/j.compbiolchem.2007.08.009

Source DB:  PubMed          Journal:  Comput Biol Chem        ISSN: 1476-9271            Impact factor:   2.877


  17 in total

Review 1.  Translational informatics: enabling high-throughput research paradigms.

Authors:  Philip R O Payne; Peter J Embi; Chandan K Sen
Journal:  Physiol Genomics       Date:  2009-09-08       Impact factor: 3.107

2.  A semi-automated, KNIME-based workflow for biofilm assays.

Authors:  Katrin Leinweber; Silke Müller; Peter G Kroth
Journal:  BMC Microbiol       Date:  2016-04-06       Impact factor: 3.605

3.  Business Process Flow Diagrams in Tissue Bank Informatics System Design, and Identification and Communication of Best Practices: The Pharmaceutical Industry Experience.

Authors:  Sandra A McDonald; Elizabeth Velasco; Nicholas T Ilasi
Journal:  Biopreserv Biobank       Date:  2010-12       Impact factor: 2.300

4.  Biocompute Objects-A Step towards Evaluation and Validation of Biomedical Scientific Computations.

Authors:  Vahan Simonyan; Jeremy Goecks; Raja Mazumder
Journal:  PDA J Pharm Sci Technol       Date:  2016-12-14

Review 5.  Recent progress using systems biology approaches to better understand molecular mechanisms of immunity.

Authors:  Rachel A Gottschalk; Andrew J Martins; Virginie Sjoelund; Bastian R Angermann; Bin Lin; Ronald N Germain
Journal:  Semin Immunol       Date:  2012-12-11       Impact factor: 11.130

6.  WebLab: a data-centric, knowledge-sharing bioinformatic platform.

Authors:  Xiaoqiao Liu; Jianmin Wu; Jun Wang; Xiaochuan Liu; Shuqi Zhao; Zhe Li; Lei Kong; Xiaocheng Gu; Jingchu Luo; Ge Gao
Journal:  Nucleic Acids Res       Date:  2009-05-22       Impact factor: 16.971

7.  CDK-Taverna: an open workflow environment for cheminformatics.

Authors:  Thomas Kuhn; Egon L Willighagen; Achim Zielesny; Christoph Steinbeck
Journal:  BMC Bioinformatics       Date:  2010-03-29       Impact factor: 3.169

8.  Ergatis: a web interface and scalable software system for bioinformatics workflows.

Authors:  Joshua Orvis; Jonathan Crabtree; Kevin Galens; Aaron Gussman; Jason M Inman; Eduardo Lee; Sreenath Nampally; David Riley; Jaideep P Sundaram; Victor Felix; Brett Whitty; Anup Mahurkar; Jennifer Wortman; Owen White; Samuel V Angiuoli
Journal:  Bioinformatics       Date:  2010-04-22       Impact factor: 6.937

9.  JACOB: an enterprise framework for computational chemistry.

Authors:  Mark P Waller; Thomas Dresselhaus; Jack Yang
Journal:  J Comput Chem       Date:  2013-04-03       Impact factor: 3.376

10.  Towards an Oncology Database (ONCOD) Using a Warehousing Approach.

Authors:  Xiaoming Wang; Lili Liu; James Fackenthal; Paul Chang; Gilliam Newstead; Steven Chmura; Ian Foster; Olufunmilayo I Olopade
Journal:  AMIA Jt Summits Transl Sci Proc       Date:  2012-03-19
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