Literature DB >> 19734330

Comparative analyses of prophage-like elements present in bifidobacterial genomes.

Marco Ventura1, Francesca Turroni, Gipsi Lima-Mendez, Elena Foroni, Aldert Zomer, Sabrina Duranti, Vanessa Giubellini, Francesca Bottacini, Philippe Horvath, Rodolphe Barrangou, David A Sela, David A Mills, Douwe van Sinderen.   

Abstract

So far, only scarce and rather diffuse information is available on bacteriophages infecting members of the genus Bifidobacterium. In the current study, we investigated the genetic organization, phylogenetic relationships, and, in some cases, transcription profiles and inducibility of 19 prophage-like elements present on the individual chromosomes of nine bifidobacterial strains, which represent six different species.

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Year:  2009        PMID： 19734330      PMCID： PMC2772436          DOI： 10.1128/AEM.01112-09

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  28 in total

1.  Evolutionary relationships among diverse bacteriophages and prophages: all the world's a phage.

Authors:  R W Hendrix; M C Smith; R N Burns; M E Ford; G F Hatfull
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-02       Impact factor: 11.205

Review 2.  Mobile genetic elements: the agents of open source evolution.

Authors:  Laura S Frost; Raphael Leplae; Anne O Summers; Ariane Toussaint
Journal:  Nat Rev Microbiol       Date:  2005-09       Impact factor: 60.633

3.  CRISPR provides acquired resistance against viruses in prokaryotes.

Authors:  Rodolphe Barrangou; Christophe Fremaux; Hélène Deveau; Melissa Richards; Patrick Boyaval; Sylvain Moineau; Dennis A Romero; Philippe Horvath
Journal:  Science       Date:  2007-03-23       Impact factor: 47.728

4.  Comparative analyses of prophage-like elements present in two Lactococcus lactis strains.

Authors:  Marco Ventura; Aldert Zomer; Carlos Canchaya; Mary O'Connell-Motherway; Oscar Kuipers; Francesca Turroni; Angela Ribbera; Elena Foroni; Girbe Buist; Udo Wegmann; Claire Shearman; Michael J Gasson; Gerald F Fitzgerald; Jan Kok; Douwe van Sinderen
Journal:  Appl Environ Microbiol       Date:  2007-10-12       Impact factor: 4.792

Review 5.  CRISPR--a widespread system that provides acquired resistance against phages in bacteria and archaea.

Authors:  Rotem Sorek; Victor Kunin; Philip Hugenholtz
Journal:  Nat Rev Microbiol       Date:  2008-03       Impact factor: 60.633

Review 6.  Genomics of Actinobacteria: tracing the evolutionary history of an ancient phylum.

Authors:  Marco Ventura; Carlos Canchaya; Andreas Tauch; Govind Chandra; Gerald F Fitzgerald; Keith F Chater; Douwe van Sinderen
Journal:  Microbiol Mol Biol Rev       Date:  2007-09       Impact factor: 11.056

7.  A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis.

Authors:  E L Sonnhammer; R Durbin
Journal:  Gene       Date:  1995-12-29       Impact factor: 3.688

8.  Prophage-like elements in bifidobacteria: insights from genomics, transcription, integration, distribution, and phylogenetic analysis.

Authors:  Marco Ventura; Ju-Hoon Lee; Carlos Canchaya; Ralf Zink; S Leahy; J A Moreno-Munoz; M O'Connell-Motherway; D Higgins; Gerald F Fitzgerald; Daniel J O'Sullivan; Douwe van Sinderen
Journal:  Appl Environ Microbiol       Date:  2005-12       Impact factor: 4.792

9.  Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence.

Authors:  S T Cole; R Brosch; J Parkhill; T Garnier; C Churcher; D Harris; S V Gordon; K Eiglmeier; S Gas; C E Barry; F Tekaia; K Badcock; D Basham; D Brown; T Chillingworth; R Connor; R Davies; K Devlin; T Feltwell; S Gentles; N Hamlin; S Holroyd; T Hornsby; K Jagels; A Krogh; J McLean; S Moule; L Murphy; K Oliver; J Osborne; M A Quail; M A Rajandream; J Rogers; S Rutter; K Seeger; J Skelton; R Squares; S Squares; J E Sulston; K Taylor; S Whitehead; B G Barrell
Journal:  Nature       Date:  1998-06-11       Impact factor: 49.962

10.  Evidence of host-virus co-evolution in tetranucleotide usage patterns of bacteriophages and eukaryotic viruses.

Authors:  David T Pride; Trudy M Wassenaar; Chandrabali Ghose; Martin J Blaser
Journal:  BMC Genomics       Date:  2006-01-18       Impact factor: 3.969
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  26 in total

1.  Bifidobacterium animalis subsp. lactis ATCC 27673 is a genomically unique strain within its conserved subspecies.

Authors:  Joseph R Loquasto; Rodolphe Barrangou; Edward G Dudley; Buffy Stahl; Chun Chen; Robert F Roberts
Journal:  Appl Environ Microbiol       Date:  2013-08-30       Impact factor: 4.792

2.  Global genome transcription profiling of Bifidobacterium bifidum PRL2010 under in vitro conditions and identification of reference genes for quantitative real-time PCR.

Authors:  Francesca Turroni; Elena Foroni; Barbara Montanini; Alice Viappiani; Francesco Strati; Sabrina Duranti; Alberto Ferrarini; Massimo Delledonne; Douwe van Sinderen; Marco Ventura
Journal:  Appl Environ Microbiol       Date:  2011-10-14       Impact factor: 4.792

3.  The impact of bacteriophages on probiotic bacteria and gut microbiota diversity.

Authors:  Marco Ventura; Tommaso Sozzi; Francesca Turroni; Diego Matteuzzi; Douwe van Sinderen
Journal:  Genes Nutr       Date:  2010-10-26       Impact factor: 5.523

4.  Genomic encyclopedia of type strains of the genus Bifidobacterium.

Authors:  Christian Milani; Gabriele Andrea Lugli; Sabrina Duranti; Francesca Turroni; Francesca Bottacini; Marta Mangifesta; Borja Sanchez; Alice Viappiani; Leonardo Mancabelli; Bernard Taminiau; Véronique Delcenserie; Rodolphe Barrangou; Abelardo Margolles; Douwe van Sinderen; Marco Ventura
Journal:  Appl Environ Microbiol       Date:  2014-08-01       Impact factor: 4.792

Review 5.  The bacterial chemical repertoire mediates metabolic exchange within gut microbiomes.

Authors:  Christopher M Rath; Pieter C Dorrestein
Journal:  Curr Opin Microbiol       Date:  2011-12-30       Impact factor: 7.934

6.  Functional genome analysis of Bifidobacterium breve UCC2003 reveals type IVb tight adherence (Tad) pili as an essential and conserved host-colonization factor.

Authors:  Mary O'Connell Motherway; Aldert Zomer; Sinead C Leahy; Justus Reunanen; Francesca Bottacini; Marcus J Claesson; Frances O'Brien; Kiera Flynn; Patrick G Casey; Jose Antonio Moreno Munoz; Breda Kearney; Aileen M Houston; Caitlin O'Mahony; Des G Higgins; Fergus Shanahan; Airi Palva; Willem M de Vos; Gerald F Fitzgerald; Marco Ventura; Paul W O'Toole; Douwe van Sinderen
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-20       Impact factor: 11.205

Review 7.  Genomic insights into bifidobacteria.

Authors:  Ju-Hoon Lee; Daniel J O'Sullivan
Journal:  Microbiol Mol Biol Rev       Date:  2010-09       Impact factor: 11.056

8.  Global transcriptional response of Clostridium difficile carrying the CD38 prophage.

Authors:  Ognjen Sekulovic; Louis-Charles Fortier
Journal:  Appl Environ Microbiol       Date:  2015-02       Impact factor: 4.792

9.  Development of a new method for detection and identification of Oenococcus oeni bacteriophages based on endolysin gene sequence and randomly amplified polymorphic DNA.

Authors:  Francesca Doria; Chiara Napoli; Antonella Costantini; Graziella Berta; Juan-Carlos Saiz; Emilia Garcia-Moruno
Journal:  Appl Environ Microbiol       Date:  2013-05-31       Impact factor: 4.792

Review 10.  Temperate Bacteriophages-The Powerful Indirect Modulators of Eukaryotic Cells and Immune Functions.

Authors:  Martyna Cieślik; Natalia Bagińska; Ewa Jończyk-Matysiak; Alicja Węgrzyn; Grzegorz Węgrzyn; Andrzej Górski
Journal:  Viruses       Date:  2021-05-28       Impact factor: 5.048
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