Literature DB >> 19724124

Crystallization and preliminary X-ray analysis of 4-pyridoxolactonase from Mesorhizobium loti.

Sayoko Matsuda1, Nana Yokochi, Yu Yoshikane, Jun Kobayashi, Chu Nhat Huy, Seiki Baba, Seiki Kuramitsu, Bunzo Mikami, Toshiharu Yagi.   

Abstract

4-pyridoxolactonase from Mesorhizobium loti MAFF303099 has been overexpressed in Escherichia coli. The recombinant enzyme was purified and was crystallized by the sitting-drop vapour-diffusion method using PEG 4000 and ammonium sulfate as precipitants. Crystals of the free enzyme (form I) and of the 5-pyridoxolactone-bound enzyme (form II) grew under these conditions. Crystals of form I diffracted to 2.0 A resolution and belonged to the monoclinic space group C2, with unit-cell parameters a = 77.93, b = 38.88, c = 81.60 A, beta = 117.33 degrees. Crystals of form II diffracted to 1.9 A resolution and belonged to the monoclinic space group C2, with unit-cell parameters a = 86.24, b = 39.35, c = 82.68 A, beta = 118.02 degrees. The calculated V(M) values suggested that the asymmetric unit contains one molecule in both crystal forms.

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Year:  2009        PMID: 19724124      PMCID: PMC2795592          DOI: 10.1107/S1744309109028772

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  9 in total

1.  4-Pyridoxolactonase from a symbiotic nitrogen-fixing bacterium Mesorhizobium loti: cloning, expression, and characterization.

Authors:  Junichi Funami; Yu Yoshikane; Hitoshi Kobayashi; Nana Yokochi; Baiqiang Yuan; Kozo Iwasaki; Kouhei Ohnishi; Toshiharu Yagi
Journal:  Biochim Biophys Acta       Date:  2005-10-03

2.  Three-dimensional structure of the quorum-quenching N-acyl homoserine lactone hydrolase from Bacillus thuringiensis.

Authors:  Dali Liu; Bryan W Lepore; Gregory A Petsko; Pei W Thomas; Everett M Stone; Walter Fast; Dagmar Ringe
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-08       Impact factor: 11.205

Review 3.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Authors:  S F Altschul; T L Madden; A A Schäffer; J Zhang; Z Zhang; W Miller; D J Lipman
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

4.  Processing of X-ray diffraction data collected in oscillation mode.

Authors:  Z Otwinowski; W Minor
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

5.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

6.  Quenching quorum-sensing-dependent bacterial infection by an N-acyl homoserine lactonase.

Authors:  Y H Dong; L H Wang; J L Xu; H B Zhang; X F Zhang; L H Zhang
Journal:  Nature       Date:  2001-06-14       Impact factor: 49.962

7.  The molecular structure and catalytic mechanism of a quorum-quenching N-acyl-L-homoserine lactone hydrolase.

Authors:  Myung Hee Kim; Won-Chan Choi; Hye Ok Kang; Jong Suk Lee; Beom Sik Kang; Kyung-Jin Kim; Zygmunt S Derewenda; Tae-Kwang Oh; Choong Hwan Lee; Jung-Kee Lee
Journal:  Proc Natl Acad Sci U S A       Date:  2005-11-28       Impact factor: 11.205

8.  Enzymes of vitamin B6 degradation. Purification and properties of 4- and 5-pyridoxolactonases.

Authors:  Y J Jong; E E Snell
Journal:  J Biol Chem       Date:  1986-11-15       Impact factor: 5.157

9.  Mechanism of the quorum-quenching lactonase (AiiA) from Bacillus thuringiensis. 1. Product-bound structures.

Authors:  Dali Liu; Jessica Momb; Pei W Thomas; Aaron Moulin; Gregory A Petsko; Walter Fast; Dagmar Ringe
Journal:  Biochemistry       Date:  2008-07-22       Impact factor: 3.162

  9 in total
  1 in total

1.  Structure of 4-pyridoxolactonase from Mesorhizobium loti.

Authors:  Jun Kobayashi; Yu Yoshikane; Toshiharu Yagi; Seiki Baba; Kimihiko Mizutani; Nobuyuki Takahashi; Bunzo Mikami
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-03-25       Impact factor: 1.056

  1 in total

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