Literature DB >> 26898713

On the vibrational behavior of single- and double-walled carbon nanotubes under the physical adsorption of biomolecules in the aqueous environment: a molecular dynamics study.

S Ajori1, R Ansari2, M Darvizeh3.   

Abstract

The adsorption of biomolecules on the walls of carbon nanotubes (CNTs) in an aqueous environment is of great importance in the field of nanobiotechnology. In this study, molecular dynamics (MD) simulations were performed to understand the mechanical vibrational behavior of single- and double-walled carbon nanotubes (SWCNTs and DWCNTs) under the physical adsorption of four important biomolecules (L-alanine, guanine, thymine, and uracil) in vacuum and an aqueous environment. It was observed that the natural frequencies of these CNTs in vacuum reduce under the physical adsorption of biomolecules. In the aqueous environment, the natural frequency of each pure CNT decreased as compared to its natural frequency in vacuum. It was also found that the frequency shift for functionalized CNTs as compared to pure CNTs in the aqueous environment was dependent on the radius and the number of walls of the CNT, and could be positive or negative.

Entities:  

Keywords:  Biomolecules; Carbon nanotubes; Mechanical vibration; Molecular dynamics simulations; Noncovalent functionalization

Mesh:

Substances:

Year:  2016        PMID: 26898713     DOI: 10.1007/s00894-016-2927-y

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  22 in total

1.  Noncovalent sidewall functionalization of single-walled carbon nanotubes for protein immobilization.

Authors:  R J Chen; Y Zhang; D Wang; H Dai
Journal:  J Am Chem Soc       Date:  2001-04-25       Impact factor: 15.419

2.  Purification of HiPCO carbon nanotubes via organic functionalization.

Authors:  Vasilios Georgakilas; Dimitrios Voulgaris; Ester Vázquez; Maurizio Prato; Dirk M Guldi; Akos Kukovecz; Hans Kuzmany
Journal:  J Am Chem Soc       Date:  2002-12-04       Impact factor: 15.419

3.  Development and testing of a general amber force field.

Authors:  Junmei Wang; Romain M Wolf; James W Caldwell; Peter A Kollman; David A Case
Journal:  J Comput Chem       Date:  2004-07-15       Impact factor: 3.376

4.  Overcoming the insolubility of carbon nanotubes through high degrees of sidewall functionalization.

Authors:  Christopher A Dyke; James M Tour
Journal:  Chemistry       Date:  2004-02-20       Impact factor: 5.236

5.  Canonical dynamics: Equilibrium phase-space distributions.

Authors: 
Journal:  Phys Rev A Gen Phys       Date:  1985-03

6.  Computational design of a CNT carrier for a high affinity bispecific anti-HER2 antibody based on trastuzumab and pertuzumab Fabs.

Authors:  Karim Salazar-Salinas; Carlos Kubli-Garfias; Jorge M Seminario
Journal:  J Mol Model       Date:  2012-11-10       Impact factor: 1.810

7.  Carbon nanotube actuators

Authors: 
Journal:  Science       Date:  1999-05-21       Impact factor: 47.728

8.  Quantum Mechanical Quantification of Weakly Interacting Complexes of Peptides with Single-Walled Carbon Nanotubes.

Authors:  Wenjie Fan; Jun Zeng; Ruiqin Zhang
Journal:  J Chem Theory Comput       Date:  2009-09-11       Impact factor: 6.006

9.  Base dependent DNA-carbon nanotube interactions: activation enthalpies and assembly-disassembly control.

Authors:  Fernando Albertorio; Mary E Hughes; Jene A Golovchenko; Daniel Branton
Journal:  Nanotechnology       Date:  2009-09-02       Impact factor: 3.874

Review 10.  Functionalized carbon nanotubes: biomedical applications.

Authors:  Sandhya Vardharajula; Sk Z Ali; Pooja M Tiwari; Erdal Eroğlu; Komal Vig; Vida A Dennis; Shree R Singh
Journal:  Int J Nanomedicine       Date:  2012-10-09
View more
  3 in total

1.  Molecular dynamics simulations of the orientation properties of cytochrome c on the surface of single-walled carbon nanotubes.

Authors:  Bing Zhang; Jia Xu; Shu-Fan Mo; Jian-Xi Yao; Song-Yuan Dai
Journal:  J Mol Model       Date:  2016-11-30       Impact factor: 1.810

2.  Understanding the anticorrosive mechanism of a cross-linked supramolecular polymer for mild steel in the condensate water: comprehensive experimental, molecular docking, and molecular dynamics investigations.

Authors:  Yucong Ma; Tingting Zhou; Wenqin Zhu; Baomin Fan; Hao Liu; Guifeng Fan; Hua Hao; Hui Sun; Biao Yang
Journal:  J Mol Model       Date:  2020-03-16       Impact factor: 1.810

3.  Molecular dynamics simulation of polystyrene copolymer with octyl short-chain branches in toluene.

Authors:  Sajad Rasouli; Mohammad Reza Moghbeli; Sousa Javan Nikkhah
Journal:  J Mol Model       Date:  2020-03-16       Impact factor: 1.810

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.