Literature DB >> 22523244

Growth-induced hormone dilution can explain the dynamics of plant root cell elongation.

Leah R Band1, Susana Úbeda-Tomás, Rosemary J Dyson, Alistair M Middleton, T Charlie Hodgman, Markus R Owen, Oliver E Jensen, Malcolm J Bennett, John R King.   

Abstract

In the elongation zone of the Arabidopsis thaliana plant root, cells undergo rapid elongation, increasing their length by ∼10-fold over 5 h while maintaining a constant radius. Although progress is being made in understanding how this growth is regulated, little consideration has been given as to how cell elongation affects the distribution of the key regulating hormones. Using a multiscale mathematical model and measurements of growth dynamics, we investigate the distribution of the hormone gibberellin in the root elongation zone. The model quantifies how rapid cell expansion causes gibberellin to dilute, creating a significant gradient in gibberellin levels. By incorporating the gibberellin signaling network, we simulate how gibberellin dilution affects the downstream components, including the growth-repressing DELLA proteins. We predict a gradient in DELLA that provides an explanation of the reduction in growth exhibited as cells move toward the end of the elongation zone. These results are validated at the molecular level by comparing predicted mRNA levels with transcriptomic data. To explore the dynamics further, we simulate perturbed systems in which gibberellin levels are reduced, considering both genetically modified and chemically treated roots. By modeling these cases, we predict how these perturbations affect gibberellin and DELLA levels and thereby provide insight into their altered growth dynamics.

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Year:  2012        PMID: 22523244      PMCID: PMC3358831          DOI: 10.1073/pnas.1113632109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  37 in total

Review 1.  Gibberellin signaling: biosynthesis, catabolism, and response pathways.

Authors:  Neil Olszewski; Tai-Ping Sun; Frank Gubler
Journal:  Plant Cell       Date:  2002       Impact factor: 11.277

2.  A gene expression map of the Arabidopsis root.

Authors:  Kenneth Birnbaum; Dennis E Shasha; Jean Y Wang; Jee W Jung; Georgina M Lambert; David W Galbraith; Philip N Benfey
Journal:  Science       Date:  2003-12-12       Impact factor: 47.728

3.  How far can a molecule of weak acid travel in the apoplast or xylem?

Authors:  Eric M Kramer
Journal:  Plant Physiol       Date:  2006-08       Impact factor: 8.340

4.  Noisy cell growth rate leads to fluctuating protein concentration in bacteria.

Authors:  Saburo Tsuru; Junya Ichinose; Akiko Kashiwagi; Bei-Wen Ying; Kunihiko Kaneko; Tetsuya Yomo
Journal:  Phys Biol       Date:  2009-06-30       Impact factor: 2.583

Review 5.  Modeling plant growth and pattern formation.

Authors:  Henrik Jönsson; Pawel Krupinski
Journal:  Curr Opin Plant Biol       Date:  2009-11-11       Impact factor: 7.834

6.  AuxV: a database of auxin transport velocities.

Authors:  Eric M Kramer; Heidi L Rutschow; Sturm S Mabie
Journal:  Trends Plant Sci       Date:  2011-06-20       Impact factor: 18.313

7.  Characterization of the molecular mechanism underlying gibberellin perception complex formation in rice.

Authors:  Ko Hirano; Kenji Asano; Hiroyuki Tsuji; Mayuko Kawamura; Hitoshi Mori; Hidemi Kitano; Miyako Ueguchi-Tanaka; Makoto Matsuoka
Journal:  Plant Cell       Date:  2010-08-17       Impact factor: 11.277

8.  The Arabidopsis GA1 locus encodes the cyclase ent-kaurene synthetase A of gibberellin biosynthesis.

Authors:  T P Sun; Y Kamiya
Journal:  Plant Cell       Date:  1994-10       Impact factor: 11.277

9.  Gibberellin signaling in the endodermis controls Arabidopsis root meristem size.

Authors:  Susana Ubeda-Tomás; Fernán Federici; Ilda Casimiro; Gerrit T S Beemster; Rishikesh Bhalerao; Ranjan Swarup; Peter Doerner; Jim Haseloff; Malcolm J Bennett
Journal:  Curr Biol       Date:  2009-07-02       Impact factor: 10.834

10.  Auxin promotes Arabidopsis root growth by modulating gibberellin response.

Authors:  Xiangdong Fu; Nicholas P Harberd
Journal:  Nature       Date:  2003-02-13       Impact factor: 49.962

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  35 in total

Review 1.  Systems Biology for Smart Crops and Agricultural Innovation: Filling the Gaps between Genotype and Phenotype for Complex Traits Linked with Robust Agricultural Productivity and Sustainability.

Authors:  Anil Kumar; Rajesh Kumar Pathak; Sanjay Mohan Gupta; Vikram Singh Gaur; Dinesh Pandey
Journal:  OMICS       Date:  2015-10

2.  Gradients in Wall Mechanics and Polysaccharides along Growing Inflorescence Stems.

Authors:  Pyae Phyo; Tuo Wang; Sarah N Kiemle; Hugh O'Neill; Sai Venkatesh Pingali; Mei Hong; Daniel J Cosgrove
Journal:  Plant Physiol       Date:  2017-10-30       Impact factor: 8.340

3.  Digital Single-Cell Analysis of Plant Organ Development Using 3DCellAtlas.

Authors:  Thomas D Montenegro-Johnson; Petra Stamm; Soeren Strauss; Alexander T Topham; Michail Tsagris; Andrew T A Wood; Richard S Smith; George W Bassel
Journal:  Plant Cell       Date:  2015-04-21       Impact factor: 11.277

Review 4.  Multiscale models in the biomechanics of plant growth.

Authors:  Oliver E Jensen; John A Fozard
Journal:  Physiology (Bethesda)       Date:  2015-03

5.  How grass keeps growing: an integrated analysis of hormonal crosstalk in the maize leaf growth zone.

Authors:  Dirk De Vos; Hilde Nelissen; Hamada AbdElgawad; Els Prinsen; Jan Broeckhove; Dirk Inzé; Gerrit T S Beemster
Journal:  New Phytol       Date:  2019-12-24       Impact factor: 10.151

Review 6.  Multiscale systems analysis of root growth and development: modeling beyond the network and cellular scales.

Authors:  Leah R Band; John A Fozard; Christophe Godin; Oliver E Jensen; Tony Pridmore; Malcolm J Bennett; John R King
Journal:  Plant Cell       Date:  2012-10-30       Impact factor: 11.277

Review 7.  Jasmonates: biosynthesis, perception, signal transduction and action in plant stress response, growth and development. An update to the 2007 review in Annals of Botany.

Authors:  C Wasternack; B Hause
Journal:  Ann Bot       Date:  2013-04-04       Impact factor: 4.357

8.  The role of topology and mechanics in uniaxially growing cell networks.

Authors:  Alexander Erlich; Gareth W Jones; Françoise Tisseur; Derek E Moulton; Alain Goriely
Journal:  Proc Math Phys Eng Sci       Date:  2020-01-29       Impact factor: 2.704

9.  Gibberellins accumulate in the elongating endodermal cells of Arabidopsis root.

Authors:  Eilon Shani; Roy Weinstain; Yi Zhang; Cristina Castillejo; Eirini Kaiserli; Joanne Chory; Roger Y Tsien; Mark Estelle
Journal:  Proc Natl Acad Sci U S A       Date:  2013-02-04       Impact factor: 11.205

10.  Plant-Specific Histone Deacetylases HDT1/2 Regulate GIBBERELLIN 2-OXIDASE2 Expression to Control Arabidopsis Root Meristem Cell Number.

Authors:  Huchen Li; Jesus Torres-Garcia; David Latrasse; Moussa Benhamed; Stefan Schilderink; Wenkun Zhou; Olga Kulikova; Heribert Hirt; Ton Bisseling
Journal:  Plant Cell       Date:  2017-08-30       Impact factor: 11.277

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