Literature DB >> 19708048

Structure and function converge to identify a hydrogen bond in a group I ribozyme active site.

Marcello Forconi1, Raghuvir N Sengupta, Mao-Chin Liu, Alan C Sartorelli, Joseph A Piccirilli, Daniel Herschlag.   

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Year:  2009        PMID： 19708048      PMCID： PMC2862986          DOI： 10.1002/anie.200903006

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN： 1433-7851            Impact factor:   15.336


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  23 in total

1.  A chemical phylogeny of group I introns based upon interference mapping of a bacterial ribozyme.

Authors:  J K Strauss-Soukup; S A Strobel
Journal:  J Mol Biol       Date:  2000-09-15       Impact factor: 5.469

2.  The guanosine binding site of the Tetrahymena ribozyme.

Authors:  F Michel; M Hanna; R Green; D P Bartel; J W Szostak
Journal:  Nature       Date:  1989-11-23       Impact factor: 49.962

3.  Comparison of binding of mixed ribose-deoxyribose analogues of CUCU to a ribozyme and to GGAGAA by equilibrium dialysis: evidence for ribozyme specific interactions with 2' OH groups.

Authors:  P C Bevilacqua; D H Turner
Journal:  Biochemistry       Date:  1991-11-05       Impact factor: 3.162

4.  Strategy for analysing the co-operativity of intramolecular interactions in peptides and proteins.

Authors:  A Horovitz; A R Fersht
Journal:  J Mol Biol       Date:  1990-08-05       Impact factor: 5.469

5.  Three metal ions at the active site of the Tetrahymena group I ribozyme.

Authors:  S o Shan; A Yoshida; S Sun; J A Piccirilli; D Herschlag
Journal:  Proc Natl Acad Sci U S A       Date:  1999-10-26       Impact factor: 11.205

6.  Specific interaction between the self-splicing RNA of Tetrahymena and its guanosine substrate: implications for biological catalysis by RNA.

Authors:  B L Bass; T R Cech
Journal:  Nature       Date:  1984 Apr 26-May 2       Impact factor: 49.962

7.  Catalysis of RNA cleavage by the Tetrahymena thermophila ribozyme. 1. Kinetic description of the reaction of an RNA substrate complementary to the active site.

Authors:  D Herschlag; T R Cech
Journal:  Biochemistry       Date:  1990-11-06       Impact factor: 3.162

8.  The intervening sequence RNA of Tetrahymena is an enzyme.

Authors:  A J Zaug; T R Cech
Journal:  Science       Date:  1986-01-31       Impact factor: 47.728

9.  Crystal structure of a self-splicing group I intron with both exons.

Authors:  Peter L Adams; Mary R Stahley; Anne B Kosek; Jimin Wang; Scott A Strobel
Journal:  Nature       Date:  2004-06-02       Impact factor: 49.962

10.  Evidence for processivity and two-step binding of the RNA substrate from studies of J1/2 mutants of the Tetrahymena ribozyme.

Authors:  D Herschlag
Journal:  Biochemistry       Date:  1992-02-11       Impact factor: 3.162
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  7 in total

1.  Exploring purine N7 interactions via atomic mutagenesis: the group I ribozyme as a case study.

Authors:  Marcello Forconi; Tara Benz-Moy; Kristin Rule Gleitsman; Eliza Ruben; Clyde Metz; Daniel Herschlag
Journal:  RNA       Date:  2012-04-27       Impact factor: 4.942

2.  A rearrangement of the guanosine-binding site establishes an extended network of functional interactions in the Tetrahymena group I ribozyme active site.

Authors:  Marcello Forconi; Raghuvir N Sengupta; Joseph A Piccirilli; Daniel Herschlag
Journal:  Biochemistry       Date:  2010-03-30       Impact factor: 3.162

3.  2'-Fluoro substituents can mimic native 2'-hydroxyls within structured RNA.

Authors:  Marcello Forconi; Jason P Schwans; Rishi H Porecha; Raghuvir N Sengupta; Joseph A Piccirilli; Daniel Herschlag
Journal:  Chem Biol       Date:  2011-08-26

4.  Insights into metalloregulation by M-box riboswitch RNAs via structural analysis of manganese-bound complexes.

Authors:  Arati Ramesh; Catherine A Wakeman; Wade C Winkler
Journal:  J Mol Biol       Date:  2011-02-15       Impact factor: 5.469

5.  Tightening of active site interactions en route to the transition state revealed by single-atom substitution in the guanosine-binding site of the Tetrahymena group I ribozyme.

Authors:  Marcello Forconi; Rishi H Porecha; Joseph A Piccirilli; Daniel Herschlag
Journal:  J Am Chem Soc       Date:  2011-05-03       Impact factor: 15.419

6.  Correcting pervasive errors in RNA crystallography through enumerative structure prediction.

Authors:  Fang-Chieh Chou; Parin Sripakdeevong; Sergey M Dibrov; Thomas Hermann; Rhiju Das
Journal:  Nat Methods       Date:  2012-12-02       Impact factor: 28.547

7.  An active site rearrangement within the Tetrahymena group I ribozyme releases nonproductive interactions and allows formation of catalytic interactions.

Authors:  Raghuvir N Sengupta; Sabine N S Van Schie; George Giambaşu; Qing Dai; Joseph D Yesselman; Darrin York; Joseph A Piccirilli; Daniel Herschlag
Journal:  RNA       Date:  2015-11-13       Impact factor: 4.942
  7 in total

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