Literature DB >> 19708020

RNA editing: a driving force for adaptive evolution?

Willemijn M Gommans1, Sean P Mullen, Stefan Maas.   

Abstract

Genetic variability is considered a key to the evolvability of species. The conversion of an adenosine (A) to inosine (I) in primary RNA transcripts can result in an amino acid change in the encoded protein, a change in secondary structure of the RNA, creation or destruction of a splice consensus site, or otherwise alter RNA fate. Substantial transcriptome and proteome variability is generated by A-to-I RNA editing through site-selective post-transcriptional recoding of single nucleotides. We posit that this epigenetic source of phenotypic variation is an unrecognized mechanism of adaptive evolution. The genetic variation introduced through editing occurs at low evolutionary cost since predominant production of the wild-type protein is retained. This property even allows exploration of sequence space that is inaccessible through mutation, leading to increased phenotypic plasticity and provides an evolutionary advantage for acclimatization as well as long-term adaptation. Furthermore, continuous probing for novel RNA editing sites throughout the transcriptome is an intrinsic property of the editing machinery and represents the molecular basis for increased adaptability. We propose that higher organisms have therefore evolved to systems with increasing RNA editing activity and, as a result, to more complex systems.

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Year:  2009        PMID: 19708020      PMCID: PMC2829293          DOI: 10.1002/bies.200900045

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  70 in total

1.  Alternative splicing in the human, mouse and rat genomes is associated with an increased frequency of exon creation and/or loss.

Authors:  Barmak Modrek; Christopher J Lee
Journal:  Nat Genet       Date:  2003-06       Impact factor: 38.330

2.  Microbiology and evolution. Modulating mutation rates in the wild.

Authors:  Susan M Rosenberg; P J Hastings
Journal:  Science       Date:  2003-05-30       Impact factor: 47.728

Review 3.  Regulation of ion channel/neurotransmitter receptor function by RNA editing.

Authors:  Peter H Seeburg; Jochen Hartner
Journal:  Curr Opin Neurobiol       Date:  2003-06       Impact factor: 6.627

4.  Nonrandom distribution of alu elements in genes of various functional categories: insight from analysis of human chromosomes 21 and 22.

Authors:  Deepak Grover; Partha P Majumder; Chandrika B Rao; Samir K Brahmachari; Mitali Mukerji
Journal:  Mol Biol Evol       Date:  2003-06-27       Impact factor: 16.240

5.  Evolutionary capacitance as a general feature of complex gene networks.

Authors:  Aviv Bergman; Mark L Siegal
Journal:  Nature       Date:  2003-07-31       Impact factor: 49.962

6.  Inosine exists in mRNA at tissue-specific levels and is most abundant in brain mRNA.

Authors:  M S Paul; B L Bass
Journal:  EMBO J       Date:  1998-02-16       Impact factor: 11.598

7.  Relative abundance of subunit mRNAs determines gating and Ca2+ permeability of AMPA receptors in principal neurons and interneurons in rat CNS.

Authors:  J R Geiger; T Melcher; D S Koh; B Sakmann; P H Seeburg; P Jonas; H Monyer
Journal:  Neuron       Date:  1995-07       Impact factor: 17.173

8.  Regulation of alternative splicing by RNA editing.

Authors:  S M Rueter; T R Dawson; R B Emeson
Journal:  Nature       Date:  1999-05-06       Impact factor: 49.962

9.  Regulation of serotonin-2C receptor G-protein coupling by RNA editing.

Authors:  C M Burns; H Chu; S M Rueter; L K Hutchinson; H Canton; E Sanders-Bush; R B Emeson
Journal:  Nature       Date:  1997-05-15       Impact factor: 49.962

10.  Adaptive evolution drives divergence of a hybrid inviability gene between two species of Drosophila.

Authors:  Daven C Presgraves; Lakshmi Balagopalan; Susan M Abmayr; H Allen Orr
Journal:  Nature       Date:  2003-06-12       Impact factor: 49.962

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  51 in total

1.  Accurate identification of A-to-I RNA editing in human by transcriptome sequencing.

Authors:  Jae Hoon Bahn; Jae-Hyung Lee; Gang Li; Christopher Greer; Guangdun Peng; Xinshu Xiao
Journal:  Genome Res       Date:  2011-09-29       Impact factor: 9.043

2.  Extensive loss of RNA editing sites in rapidly evolving Silene mitochondrial genomes: selection vs. retroprocessing as the driving force.

Authors:  Daniel B Sloan; Alice H MacQueen; Andrew J Alverson; Jeffrey D Palmer; Douglas R Taylor
Journal:  Genetics       Date:  2010-05-17       Impact factor: 4.562

Review 3.  Alternative splicing and evolution: diversification, exon definition and function.

Authors:  Hadas Keren; Galit Lev-Maor; Gil Ast
Journal:  Nat Rev Genet       Date:  2010-04-08       Impact factor: 53.242

Review 4.  One hundred years of pleiotropy: a retrospective.

Authors:  Frank W Stearns
Journal:  Genetics       Date:  2010-11       Impact factor: 4.562

Review 5.  The role of Alu elements in the cis-regulation of RNA processing.

Authors:  Chammiran Daniel; Mikaela Behm; Marie Öhman
Journal:  Cell Mol Life Sci       Date:  2015-07-30       Impact factor: 9.261

Review 6.  High throughput sequencing revolution reveals conserved fundamentals of U-indel editing.

Authors:  Sara L Zimmer; Rachel M Simpson; Laurie K Read
Journal:  Wiley Interdiscip Rev RNA       Date:  2018-06-11       Impact factor: 9.957

7.  Human coding RNA editing is generally nonadaptive.

Authors:  Guixia Xu; Jianzhi Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2014-02-24       Impact factor: 11.205

8.  Diverse selective regimes shape genetic diversity at ADAR genes and at their coding targets.

Authors:  Diego Forni; Alessandra Mozzi; Chiara Pontremoli; Jacopo Vertemara; Uberto Pozzoli; Mara Biasin; Nereo Bresolin; Mario Clerici; Rachele Cagliani; Manuela Sironi
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

9.  A-to-I RNA editing is developmentally regulated and generally adaptive for sexual reproduction in Neurospora crassa.

Authors:  Huiquan Liu; Yang Li; Daipeng Chen; Zhaomei Qi; Qinhu Wang; Jianhua Wang; Cong Jiang; Jin-Rong Xu
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-28       Impact factor: 11.205

Review 10.  A-to-I RNA editing - immune protector and transcriptome diversifier.

Authors:  Eli Eisenberg; Erez Y Levanon
Journal:  Nat Rev Genet       Date:  2018-08       Impact factor: 53.242

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