Literature DB >> 19706454

Discovery of Escherichia coli methionyl-tRNA synthetase mutants for efficient labeling of proteins with azidonorleucine in vivo.

I Caglar Tanrikulu1, Emmanuelle Schmitt, Yves Mechulam, William A Goddard, David A Tirrell.   

Abstract

Incorporation of noncanonical amino acids into cellular proteins often requires engineering new aminoacyl-tRNA synthetase activity into the cell. A screening strategy that relies on cell-surface display of reactive amino acid side-chains was used to identify a diverse set of methionyl-tRNA synthetase (MetRS) mutants that allow efficient incorporation of the methionine (Met) analog azidonorleucine (Anl). We demonstrate that the extent of cell-surface labeling in vivo is a good indicator of the rate of Anl activation by the MetRS variant harbored by the cell. By screening at low Anl concentrations in Met-supplemented media, MetRS variants with improved activities toward Anl and better discrimination against Met were identified.

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Year:  2009        PMID: 19706454      PMCID: PMC2741243          DOI: 10.1073/pnas.0905735106

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  35 in total

1.  Expansion of the genetic code enables design of a novel "gold" class of green fluorescent proteins.

Authors:  Jae Hyun Bae; Marina Rubini; Gregor Jung; Georg Wiegand; Markus H J Seifert; M Kamran Azim; Jeong Sun Kim; Andreas Zumbusch; Tad A Holak; Luis Moroder; Robert Huber; Nediljko Budisa
Journal:  J Mol Biol       Date:  2003-05-16       Impact factor: 5.469

2.  Stabilization of bzip peptides through incorporation of fluorinated aliphatic residues.

Authors:  Soojin Son; I Caglar Tanrikulu; David A Tirrell
Journal:  Chembiochem       Date:  2006-08       Impact factor: 3.164

3.  Chemical probes for the rapid detection of Fatty-acylated proteins in Mammalian cells.

Authors:  Howard C Hang; Ernst-Jan Geutjes; Gijsbert Grotenbreg; Annette M Pollington; Marie Jose Bijlmakers; Hidde L Ploegh
Journal:  J Am Chem Soc       Date:  2007-02-17       Impact factor: 15.419

4.  Lithographic patterning of photoreactive cell-adhesive proteins.

Authors:  Isaac S Carrico; Stacey A Maskarinec; Sarah C Heilshorn; Marissa L Mock; Julie C Liu; Paul J Nowatzki; Christian Franck; Guruswami Ravichandran; David A Tirrell
Journal:  J Am Chem Soc       Date:  2007-03-31       Impact factor: 15.419

5.  Selective dye-labeling of newly synthesized proteins in bacterial cells.

Authors:  Kimberly E Beatty; Fang Xie; Qian Wang; David A Tirrell
Journal:  J Am Chem Soc       Date:  2005-10-19       Impact factor: 15.419

6.  Presentation and detection of azide functionality in bacterial cell surface proteins.

Authors:  A James Link; Mandy K S Vink; David A Tirrell
Journal:  J Am Chem Soc       Date:  2004-09-01       Impact factor: 15.419

7.  Transition state stabilization by a phylogenetically conserved tyrosine residue in methionyl-tRNA synthetase.

Authors:  G Ghosh; S Brunie; L H Schulman
Journal:  J Biol Chem       Date:  1991-09-15       Impact factor: 5.157

8.  A promiscuous aminoacyl-tRNA synthetase that incorporates cysteine, methionine, and alanine homologs into proteins.

Authors:  Eric Brustad; Mark L Bushey; Ansgar Brock; Johnathan Chittuluru; Peter G Schultz
Journal:  Bioorg Med Chem Lett       Date:  2008-09-17       Impact factor: 2.823

9.  A strain-promoted [3 + 2] azide-alkyne cycloaddition for covalent modification of biomolecules in living systems.

Authors:  Nicholas J Agard; Jennifer A Prescher; Carolyn R Bertozzi
Journal:  J Am Chem Soc       Date:  2004-11-24       Impact factor: 15.419

10.  Selenomethionyl proteins produced for analysis by multiwavelength anomalous diffraction (MAD): a vehicle for direct determination of three-dimensional structure.

Authors:  W A Hendrickson; J R Horton; D M LeMaster
Journal:  EMBO J       Date:  1990-05       Impact factor: 11.598

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  53 in total

Review 1.  Residue-specific incorporation of non-canonical amino acids into proteins: recent developments and applications.

Authors:  Jeremiah A Johnson; Ying Y Lu; James A Van Deventer; David A Tirrell
Journal:  Curr Opin Chem Biol       Date:  2010-11-09       Impact factor: 8.822

2.  A rationally designed pyrrolysyl-tRNA synthetase mutant with a broad substrate spectrum.

Authors:  Yane-Shih Wang; Xinqiang Fang; Ashley L Wallace; Bo Wu; Wenshe R Liu
Journal:  J Am Chem Soc       Date:  2012-02-06       Impact factor: 15.419

3.  Metal-free sequential [3 + 2]-dipolar cycloadditions using cyclooctynes and 1,3-dipoles of different reactivity.

Authors:  Brian C Sanders; Frédéric Friscourt; Petr A Ledin; Ngalle Eric Mbua; Selvanathan Arumugam; Jun Guo; Thomas J Boltje; Vladimir V Popik; Geert-Jan Boons
Journal:  J Am Chem Soc       Date:  2010-12-23       Impact factor: 15.419

4.  Comparative analysis of cleavable azobenzene-based affinity tags for bioorthogonal chemical proteomics.

Authors:  Yu-Ying Yang; Markus Grammel; Anuradha S Raghavan; Guillaume Charron; Howard C Hang
Journal:  Chem Biol       Date:  2010-11-24

5.  Noncanonical amino acids in the interrogation of cellular protein synthesis.

Authors:  John T Ngo; David A Tirrell
Journal:  Acc Chem Res       Date:  2011-08-04       Impact factor: 22.384

6.  A Versatile Approach for Site-Specific Lysine Acylation in Proteins.

Authors:  Zhipeng A Wang; Yadagiri Kurra; Xin Wang; Yu Zeng; Yan-Jiun Lee; Vangmayee Sharma; Hening Lin; Susie Y Dai; Wenshe R Liu
Journal:  Angew Chem Int Ed Engl       Date:  2017-01-02       Impact factor: 15.336

7.  Upgrading protein synthesis for synthetic biology.

Authors:  Patrick O'Donoghue; Jiqiang Ling; Yane-Shih Wang; Dieter Söll
Journal:  Nat Chem Biol       Date:  2013-10       Impact factor: 15.040

Review 8.  Exterior design: strategies for redecorating the bacterial surface with small molecules.

Authors:  Samir Gautam; Thomas J Gniadek; Taehan Kim; David A Spiegel
Journal:  Trends Biotechnol       Date:  2013-03-13       Impact factor: 19.536

9.  Switching from an induced-fit to a lock-and-key mechanism in an aminoacyl-tRNA synthetase with modified specificity.

Authors:  Emmanuelle Schmitt; I Caglar Tanrikulu; Tae Hyeon Yoo; Michel Panvert; David A Tirrell; Yves Mechulam
Journal:  J Mol Biol       Date:  2009-10-23       Impact factor: 5.469

10.  Protein modification by strain-promoted alkyne-nitrone cycloaddition.

Authors:  Xinghai Ning; Rinske P Temming; Jan Dommerholt; Jun Guo; Daniel B Ania; Marjoke F Debets; Margreet A Wolfert; Geert-Jan Boons; Floris L van Delft
Journal:  Angew Chem Int Ed Engl       Date:  2010-04-12       Impact factor: 15.336

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