Literature DB >> 19703490

Realistic simulation of extracellular recordings.

Juan Martinez1, Carlos Pedreira, Matias J Ison, Rodrigo Quian Quiroga.   

Abstract

In this paper we present an efficient method to generate realistic simulations of extracellular recordings. The method uses a hybrid and computationally simple approach, where the features of the background noise arise naturally from its biophysical process of generation. The generated data resemble the characteristics of real recordings, as quantified by the amplitude and frequency distributions. Moreover, we reproduce real features that are specially challenging for the analysis of extracellular data, such as the presence of sparse firing neurons and multi-unit activity. We compare our simulations with real recordings from the human medial temporal lobe and exemplify their use for testing spike detection and sorting algorithms. These results show that this technique provides an optimal scenario for generating realistic simulations of extracellular recordings.

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Year:  2009        PMID: 19703490     DOI: 10.1016/j.jneumeth.2009.08.017

Source DB:  PubMed          Journal:  J Neurosci Methods        ISSN: 0165-0270            Impact factor:   2.390


  25 in total

1.  Heterogeneous attractor cell assemblies for motor planning in premotor cortex.

Authors:  Maurizio Mattia; Pierpaolo Pani; Giovanni Mirabella; Stefania Costa; Paolo Del Giudice; Stefano Ferraina
Journal:  J Neurosci       Date:  2013-07-03       Impact factor: 6.167

2.  Minimum requirements for accurate and efficient real-time on-chip spike sorting.

Authors:  Joaquin Navajas; Deren Y Barsakcioglu; Amir Eftekhar; Andrew Jackson; Timothy G Constandinou; Rodrigo Quian Quiroga
Journal:  J Neurosci Methods       Date:  2014-04-24       Impact factor: 2.390

Review 3.  Continuing progress of spike sorting in the era of big data.

Authors:  David Carlson; Lawrence Carin
Journal:  Curr Opin Neurobiol       Date:  2019-03-08       Impact factor: 6.627

4.  Fast simulation of extracellular action potential signatures based on a morphological filtering approximation.

Authors:  Harry Tran; Radu Ranta; Steven Le Cam; Valérie Louis-Dorr
Journal:  J Comput Neurosci       Date:  2020-01-17       Impact factor: 1.621

5.  An Integrated Circuit for Simultaneous Extracellular Electrophysiology Recording and Optogenetic Neural Manipulation.

Authors:  Chang Hao Chen; Elizabeth A McCullagh; Sio Hang Pun; Peng Un Mak; Mang I Vai; Pui In Mak; Achim Klug; Tim C Lei
Journal:  IEEE Trans Biomed Eng       Date:  2017-03       Impact factor: 4.538

Review 6.  Towards reliable spike-train recordings from thousands of neurons with multielectrodes.

Authors:  Gaute T Einevoll; Felix Franke; Espen Hagen; Christophe Pouzat; Kenneth D Harris
Journal:  Curr Opin Neurobiol       Date:  2011-10-22       Impact factor: 6.627

7.  Inhibition of the cluster of differentiation 14 innate immunity pathway with IAXO-101 improves chronic microelectrode performance.

Authors:  John K Hermann; Madhumitha Ravikumar; Andrew J Shoffstall; Evon S Ereifej; Kyle M Kovach; Jeremy Chang; Arielle Soffer; Chun Wong; Vishnupriya Srivastava; Patrick Smith; Grace Protasiewicz; Jingle Jiang; Stephen M Selkirk; Robert H Miller; Steven Sidik; Nicholas P Ziats; Dawn M Taylor; Jeffrey R Capadona
Journal:  J Neural Eng       Date:  2018-04       Impact factor: 5.379

Review 8.  Improving data quality in neuronal population recordings.

Authors:  Kenneth D Harris; Rodrigo Quian Quiroga; Jeremy Freeman; Spencer L Smith
Journal:  Nat Neurosci       Date:  2016-08-26       Impact factor: 24.884

9.  Extracellular voltage threshold settings can be tuned for optimal encoding of movement and stimulus parameters.

Authors:  Emily R Oby; Sagi Perel; Patrick T Sadtler; Douglas A Ruff; Jessica L Mischel; David F Montez; Marlene R Cohen; Aaron P Batista; Steven M Chase
Journal:  J Neural Eng       Date:  2016-04-21       Impact factor: 5.379

10.  Automated long-term recording and analysis of neural activity in behaving animals.

Authors:  Ashesh K Dhawale; Rajesh Poddar; Steffen Be Wolff; Valentin A Normand; Evi Kopelowitz; Bence P Ölveczky
Journal:  Elife       Date:  2017-09-08       Impact factor: 8.140

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